Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01100 - ( 60S acidic ribosomal protein P1 (RPP1A) )
19 Proteins interacs with AT1G01100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09200 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridinterologs mappingCo-expression | FSW = 0.0719
| Class C:vacuoleplasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT3G62870 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0097
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G27710 | PredictedAffinity Capture-MS | FSW = 0.0615
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT5G47700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1259
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT2G38290 | Predictedinterologs mapping | FSW = 0.0428
| Class C:plasma membrane | ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G10330 | Predictedinteraction predictiontwo hybrid | FSW = 0.0227
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT5G27670 | Predictedinterologs mapping | FSW = 0.1270
| Unknown | HTA7 (HISTONE H2A 7) DNA BINDING |
AT3G13920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0314
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0206
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0443
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G19210 | PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | ATRLI2 TRANSPORTER |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT2G22425 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | PEPTIDASE |
AT2G40010 | Predictedtwo hybridtwo hybrid | FSW = 0.0645
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT4G00810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0625
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT5G24510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1545
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454