Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01290 - ( CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) catalytic )
11 Proteins interacs with AT1G01290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G63490 | Predictedpull down | FSW = 0.0806
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT4G33760 | Predictedpull down | FSW = 0.0714
| Unknown | TRNA SYNTHETASE CLASS II (D K AND N) FAMILY PROTEIN |
AT2G29630 | Predictedpull down | FSW = 0.0482
| Unknown | THIC (THIAMINC) ADP-RIBOSE PYROPHOSPHOHYDROLASE/ CATALYTIC/ IRON-SULFUR CLUSTER BINDING |
AT5G30510 | Predictedpull down | FSW = 0.1508
| Unknown | RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G55280 | Predictedpull down | FSW = 0.0408
| Unknown | FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE |
AT1G24240 | Predictedpull down | FSW = 0.0571
| Unknown | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
AT2G33450 | Predictedpull down | FSW = 0.0346
| Unknown | 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28) |
ATCG00810 | Predictedpull down | FSW = 0.0224
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT5G61380 | Predictedpull down | FSW = 0.0408
| Unknown | TOC1 (TIMING OF CAB EXPRESSION 1) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G24560 | Predictedpull down | FSW = 0.2882
| Unknown | RSY3 (RASPBERRY 3) |
AT5G64650 | Predictedpull down | FSW = 0.1250
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454