Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01300 - ( aspartyl protease family protein )

7 Proteins interacs with AT1G01300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G31920

Experimental

two hybrid

FSW = 0.1000

Class B:

plastid

nucleus

extracellular

Class D:

nucleus (p = 0.78)

ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR
AT1G07420

Predicted

Phenotypic Suppression

FSW = 0.0267

Class C:

plastid

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0022

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G03330

Predicted

two hybrid

FSW = 0.0271

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT4G33080

Predicted

synthetic growth defect

FSW = 0.0471

Unknown

PROTEIN KINASE PUTATIVE
AT5G22850

Predicted

Phenotypic Enhancement

FSW = 0.0529

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT1G05840

Predicted

Gene fusion method

Co-expression

FSW = 0.1262

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454