Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01510 - ( AN (ANGUSTIFOLIA) protein binding )
27 Proteins interacs with AT1G01510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G23990 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT3G13860 | Predictedtwo hybridCo-expression | FSW = 0.0375
| Unknown | HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING |
AT5G63110 | PredictedReconstituted Complex | FSW = 0.0271
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT3G12480 | Predictedtwo hybridtwo hybrid | FSW = 0.0290
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G54610 | Predictedbiochemical | FSW = 0.0278
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G13445 | PredictedReconstituted Complex | FSW = 0.0071
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G33410 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0762
| Unknown | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE |
AT2G44510 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0184
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
AT5G28650 | PredictedPhenotypic Suppression | FSW = 0.0324
| Unknown | WRKY74 CALMODULIN BINDING / TRANSCRIPTION FACTOR |
AT1G18450 | Predictedin vivotwo hybrid | FSW = 0.0375
| Unknown | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G17690 | PredictedReconstituted Complexbiochemicalin vivoAffinity Capture-MSAffinity Capture-Western | FSW = 0.0465
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT1G55900 | Predictedtwo hybrid | FSW = 0.0726
| Unknown | TIM50 |
AT1G49760 | Predictedtwo hybridtwo hybrid | FSW = 0.0059
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G26210 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G18465 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | RNA HELICASE PUTATIVE |
AT4G20320 | Predictedtwo hybridtwo hybrid | FSW = 0.0726
| Unknown | CTP SYNTHASE/ CATALYTIC |
AT4G34110 | Predictedtwo hybrid | FSW = 0.0152
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G40490 | Predictedtwo hybrid | FSW = 0.0099
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G63660 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0087
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT5G03830 | Predictedtwo hybrid | FSW = 0.0595
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS P21CIP1-BINDING PROTEIN-RELATED (TAIRAT2G445101) HAS 225 BLAST HITS TO 225 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 68 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 36 (SOURCE NCBI BLINK) |
AT5G61070 | PredictedReconstituted Complexin vitroin vivotwo hybrid | FSW = 0.1443
| Unknown | HDA18 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE DEACETYLASE |
AT1G15200 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0267
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
AT1G54380 | PredictedAffinity Capture-Western | FSW = 0.0345
| Unknown | SPLICEOSOME PROTEIN-RELATED |
AT3G12280 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G16260 | Predictedin vivoAffinity Capture-MS | FSW = 0.0282
| Unknown | TRZ4 (TRNASE Z 4) 3-TRNA PROCESSING ENDORIBONUCLEASE/ CATALYTIC |
AT3G52115 | PredictedReconstituted Complextwo hybridin vitroin vivoin vivoin vitrotwo hybridAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.0664
| Unknown | ATGR1 (ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1) |
AT5G15020 | Predictedin vivo | FSW = 0.0415
| Unknown | SNL2 (SIN3-LIKE 2) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454