Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01530 - ( AGL28 (AGAMOUS-LIKE 28) DNA binding / transcription factor )

11 Proteins interacs with AT1G01530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G65300

Experimental

two hybrid

FSW = 0.1062

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL38 (AGAMOUS-LIKE 38) DNA BINDING / TRANSCRIPTION FACTOR
AT5G26650

Experimental

two hybrid

FSW = 0.0462

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL36 (AGAMOUS-LIKE 36) DNA BINDING / TRANSCRIPTION FACTOR
AT1G65330

Experimental

two hybrid

FSW = 0.1170

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

PHE1 (PHERES1) DNA BINDING / TRANSCRIPTION FACTOR
AT1G31630

Experimental

two hybrid

FSW = 0.1469

Class B:

nucleus

cytosol

Class D:

mitochondrion (p = 0.82)

AGL86 (AGAMOUS-LIKE 86) DNA BINDING / TRANSCRIPTION FACTOR
AT4G12610

Predicted

two hybrid

in vivo

in vitro

in vitro

in vivo

two hybrid

FSW = 0.0220

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT5G23260

Predicted

Gene fusion method

Co-expression

FSW = 0.0381

Class C:

nucleus

TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT4G36590

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1164

Class C:

nucleus

MADS-BOX PROTEIN (AGL40)
AT4G16780

Predicted

in vivo

Enriched domain pair

Co-expression

FSW = 0.1025

Unknown

ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) DNA BINDING / PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT3G28730

Predicted

in vivo

FSW = 0.0130

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT3G61150

Predicted

in vitro

in vivo

Enriched domain pair

Co-expression

FSW = 0.0426

Unknown

HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT1G01780

Predicted

in vitro

in vivo

FSW = 0.0462

Unknown

LIM DOMAIN-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454