Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02100 - ( leucine carboxyl methyltransferase family protein )
89 Proteins interacs with AT1G02100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0721
| Unknown | HISTONE H4 |
AT4G16660 | PredictedPhenotypic Suppression | FSW = 0.1975
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G72730 | PredictedPhenotypic Suppression | FSW = 0.0285
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G11260 | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-MSReconstituted Complex | FSW = 0.0425
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G16240 | PredictedPhenotypic Suppression | FSW = 0.0645
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0761
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G26590 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defectAffinity Capture-MS | FSW = 0.0658
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedCo-crystal StructureAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-crystal StructureCo-purification | FSW = 0.1377
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G07090 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0062
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0680
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G62030 | Predictedinterologs mapping | FSW = 0.0129
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4) |
AT2G45300 | PredictedAffinity Capture-MS | FSW = 0.1330
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G60540 | PredictedPhenotypic Suppression | FSW = 0.0870
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT1G27450 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.0450
| Unknown | PYRUVATE KINASE PUTATIVE |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1711
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04340 | PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT4G25740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2247
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
AT1G70580 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0455
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G60180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic Lethality | FSW = 0.2523
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT2G07687 | Predictedinterologs mapping | FSW = 0.0238
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 3 |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0798
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G28740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1795
| Unknown | HIS4 DNA BINDING |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT5G61000 | Predictedinterologs mapping | FSW = 0.0062
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT2G47620 | Predictedinterologs mappinginterologs mappinginterologs mappinginterologs mappingtwo hybridCo-crystal StructureCo-crystal Structuretwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridCo-purificationCo-crystal StructureReconstituted Complexinterologs mappingSynthetic LethalityPhenotypic EnhancementSynthetic Rescue | FSW = 0.0855
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT4G25340 | PredictedPhenotypic Suppression | FSW = 0.0924
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G20160 | Predictedsynthetic growth defect | FSW = 0.0556
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G47630 | Predictedsynthetic growth defect | FSW = 0.0826
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G18480 | PredictedAffinity Capture-WesternCo-purificationPhenotypic Suppression | FSW = 0.0952
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT2G14610 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0840
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G66590 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.1176
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.0910
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G54300 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT1G17810 | PredictedAffinity Capture-MS | FSW = 0.0733
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT3G54820 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT4G16420 | PredictedAffinity Capture-MS | FSW = 0.1115
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G17720 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G13580 | PredictedSynthetic Lethality | FSW = 0.1677
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0931
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.1019
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G66950 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0512
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0461
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G33560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1233
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G34750 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSPhenotypic Suppression | FSW = 0.2174
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2409
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT2G44065 | PredictedPhenotypic Suppression | FSW = 0.0155
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
AT2G44820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1563
| Unknown | UNKNOWN PROTEIN |
AT2G47090 | PredictedAffinity Capture-MS | FSW = 0.0559
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G09640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.2218
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G13060 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
AT3G13210 | PredictedSynthetic Lethality | FSW = 0.0541
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G45190 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.0898
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G04700 | PredictedReconstituted Complex | FSW = 0.0831
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G10480 | PredictedAffinity Capture-MS | FSW = 0.0319
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0503
| Unknown | UNKNOWN PROTEIN |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0567
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G13400 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G14180 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1924
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G49970 | Predictedinterologs mappingAffinity Capture-Westerntwo hybrid | FSW = 0.1035
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G67510 | Predictedinterologs mapping | FSW = 0.0554
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26B) |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0188
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G31170 | PredictedPhenotypic Suppression | FSW = 0.0312
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0737
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G34760 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.0685
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G37420 | PredictedPhenotypic Suppression | FSW = 0.1419
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G02000 | Predictedinterologs mapping | FSW = 0.1672
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G18660 | PredictedPhenotypic Enhancement | FSW = 0.0774
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G11920 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0458
| Unknown | ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G24840 | PredictedPhenotypic Enhancement | FSW = 0.0445
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G44830 | PredictedPhenotypic Suppression | FSW = 0.1361
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G54960 | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454