Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02410 - ( cytochrome c oxidase assembly protein CtaG / Cox11 family )

9 Proteins interacs with AT1G02410
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G09570

Experimental

two hybrid

FSW = 0.0190

Class B:

nucleus

mitochondrion

cytosol

Class D:

plastid (p = 0.78)

CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT5G27400

Predicted

two hybrid

two hybrid

FSW = 0.0556

Unknown

UNKNOWN PROTEIN
AT2G44150

Predicted

Synthetic Lethality

FSW = 0.0117

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G45700

Predicted

Phenotypic Enhancement

FSW = 0.0889

Unknown

STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN
AT2G25530

Predicted

interologs mapping

FSW = 0.0556

Unknown

AFG1-LIKE ATPASE FAMILY PROTEIN
AT3G12180

Predicted

two hybrid

interaction prediction

FSW = 0.0748

Unknown

CORNICHON FAMILY PROTEIN
AT5G16640

Predicted

Phenotypic Suppression

FSW = 0.0556

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G56090

Predicted

Dosage Growth Defect

FSW = 0.0556

Unknown

COX15 (CYTOCHROME C OXIDASE 15)
AT1G12340

Predicted

two hybrid

FSW = 0.0710

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454