Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02500 - ( SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) methionine adenosyltransferase )

40 Proteins interacs with AT1G02500
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G79550

Predicted

interologs mapping

FSW = 0.1035

Class C:

plasma membrane

nucleus

PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE
AT2G36880

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0395

Class C:

plasma membrane

nucleus

MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT3G05560

Predicted

interologs mapping

FSW = 0.0463

Class C:

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT3G17390

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

FSW = 0.2051

Class C:

plasma membrane

nucleus

MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT3G55360

Predicted

Affinity Capture-MS

FSW = 0.0157

Class C:

plasma membrane

CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT1G04750

Predicted

Synthetic Lethality

FSW = 0.0152

Class C:

plasma membrane

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G19990

Predicted

Affinity Capture-MS

FSW = 0.0187

Class C:

plasma membrane

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT4G18800

Predicted

interologs mapping

FSW = 0.0232

Class C:

plasma membrane

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G58430

Predicted

Synthetic Rescue

FSW = 0.0806

Class C:

plasma membrane

ATEXO70B1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1) PROTEIN BINDING
AT1G29960

Predicted

Colocalization

Reconstituted Complex

FSW = 0.0805

Class C:

nucleus

PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT4G01850

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0508

Class C:

nucleus

SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT3G57000

Predicted

interologs mapping

FSW = 0.0339

Class C:

nucleus

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT3G44300

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

interologs mapping

Affinity Capture-Western

FSW = 0.1537

Unknown

NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT3G62870

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0238

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0127

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G40890

Predicted

Affinity Capture-MS

FSW = 0.0233

Unknown

ATCLC-A (CHLORIDE CHANNEL A) ANION CHANNEL/ NITRATE TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED CHLORIDE CHANNEL
AT5G36880

Predicted

Affinity Capture-MS

FSW = 0.0365

Unknown

ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G63980

Predicted

Synthetic Lethality

FSW = 0.0290

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G25400

Predicted

Synthetic Lethality

FSW = 0.0559

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT1G26160

Predicted

interologs mapping

Synthetic Rescue

Affinity Capture-MS

FSW = 0.0766

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT4G39910

Predicted

Affinity Capture-MS

FSW = 0.1035

Unknown

ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) UBIQUITIN-SPECIFIC PROTEASE
AT2G18230

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0926

Unknown

ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT2G31260

Predicted

Synthetic Rescue

FSW = 0.0329

Unknown

APG9 (AUTOPHAGY 9)
AT2G34180

Predicted

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Reconstituted Complex

two hybrid

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Reconstituted Complex

interologs mapping

Affinity Capture-MS

interologs mapping

FSW = 0.0993

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G43190

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0229

Unknown

RIBONUCLEASE P FAMILY PROTEIN
AT2G48100

Predicted

Synthetic Lethality

FSW = 0.0175

Unknown

EXONUCLEASE FAMILY PROTEIN
AT5G48010

Predicted

Reconstituted Complex

two hybrid

two hybrid

Affinity Capture-Western

far western blotting

Reconstituted Complex

FSW = 0.0347

Unknown

THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE
AT1G29800

Predicted

interologs mapping

FSW = 0.1277

Unknown

PHOSPHOINOSITIDE BINDING / ZINC ION BINDING
AT1G34580

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0366

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G50370

Predicted

Affinity Capture-MS

FSW = 0.0457

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT2G03690

Predicted

Affinity Capture-MS

FSW = 0.0431

Unknown

COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT2G31900

Predicted

Affinity Capture-MS

FSW = 0.0132

Unknown

XIF MOTOR
AT5G04510

Predicted

Affinity Capture-MS

FSW = 0.0178

Unknown

PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE
AT5G22030

Predicted

Phenotypic Enhancement

FSW = 0.0824

Unknown

UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G61330

Predicted

interologs mapping

FSW = 0.0801

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT3G48780

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0095

Unknown

SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT1G16280

Predicted

Affinity Capture-MS

Gene neighbors method

Co-expression

FSW = 0.0215

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G20650

Predicted

interologs mapping

FSW = 0.0142

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G08960Predicted

two hybrid

FSW = 0.0511

Unknown

BINDING / PROTEIN TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454