Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02500 - ( SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) methionine adenosyltransferase )
40 Proteins interacs with AT1G02500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G79550 | Predictedinterologs mapping | FSW = 0.1035
| Class C:plasma membranenucleus | PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE |
AT2G36880 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0395
| Class C:plasma membranenucleus | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT3G05560 | Predictedinterologs mapping | FSW = 0.0463
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT3G17390 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.2051
| Class C:plasma membranenucleus | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT3G55360 | PredictedAffinity Capture-MS | FSW = 0.0157
| Class C:plasma membrane | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT1G04750 | PredictedSynthetic Lethality | FSW = 0.0152
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0187
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT4G18800 | Predictedinterologs mapping | FSW = 0.0232
| Class C:plasma membrane | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT5G58430 | PredictedSynthetic Rescue | FSW = 0.0806
| Class C:plasma membrane | ATEXO70B1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1) PROTEIN BINDING |
AT1G29960 | PredictedColocalizationReconstituted Complex | FSW = 0.0805
| Class C:nucleus | PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT4G01850 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0508
| Class C:nucleus | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT3G57000 | Predictedinterologs mapping | FSW = 0.0339
| Class C:nucleus | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
AT3G44300 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexAffinity Capture-MSinterologs mappingAffinity Capture-Western | FSW = 0.1537
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G62870 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0238
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G40890 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | ATCLC-A (CHLORIDE CHANNEL A) ANION CHANNEL/ NITRATE TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G63980 | PredictedSynthetic Lethality | FSW = 0.0290
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT5G25400 | PredictedSynthetic Lethality | FSW = 0.0559
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT1G26160 | Predictedinterologs mappingSynthetic RescueAffinity Capture-MS | FSW = 0.0766
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT4G39910 | PredictedAffinity Capture-MS | FSW = 0.1035
| Unknown | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) UBIQUITIN-SPECIFIC PROTEASE |
AT2G18230 | Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternSynthetic Lethality | FSW = 0.0926
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G31260 | PredictedSynthetic Rescue | FSW = 0.0329
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G34180 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted Complextwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-WesternReconstituted Complexinterologs mappingAffinity Capture-MSinterologs mapping | FSW = 0.0993
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G43190 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0229
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0175
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT5G48010 | PredictedReconstituted Complextwo hybridtwo hybridAffinity Capture-Westernfar western blottingReconstituted Complex | FSW = 0.0347
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT1G29800 | Predictedinterologs mapping | FSW = 0.1277
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT1G34580 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0366
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0457
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | XIF MOTOR |
AT5G04510 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G22030 | PredictedPhenotypic Enhancement | FSW = 0.0824
| Unknown | UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G61330 | Predictedinterologs mapping | FSW = 0.0801
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT3G48780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0095
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT1G16280 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0215
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G20650 | Predictedinterologs mapping | FSW = 0.0142
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G08960 | Predictedtwo hybrid | FSW = 0.0511
| Unknown | BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454