Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02730 - ( ATCSLD5 14-beta-D-xylan synthase/ cellulose synthase )
48 Proteins interacs with AT1G02730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G36530 | Predictedtwo hybrid | FSW = 0.0105
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.2367
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G07100 | Predictedtwo hybrid | FSW = 0.0039
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G09820 | Predictedtwo hybridAffinity Capture-Westerntwo hybrid | FSW = 0.2136
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G77750 | Predictedtwo hybrid | FSW = 0.0407
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE |
AT2G26080 | Predictedtwo hybrid | FSW = 0.0805
| Unknown | ATGLDP2 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 2) ATP BINDING / GLYCINE DEHYDROGENASE (DECARBOXYLATING) |
AT1G31190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3701
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT5G49030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1889
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G23740 | Predictedtwo hybrid | FSW = 0.0121
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT5G16910 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1342
| Unknown | CSLD2 (CELLULOSE-SYNTHASE LIKE D2) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2917
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2525
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.2737
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT5G47180 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN |
AT3G14415 | Predictedtwo hybrid | FSW = 0.0193
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0379
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G59960 | PredictedAffinity Capture-MS | FSW = 0.2931
| Unknown | UNKNOWN PROTEIN |
AT1G30810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2930
| Unknown | TRANSCRIPTION FACTOR |
AT4G20400 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN |
AT4G33730 | Predictedtwo hybrid | FSW = 0.0035
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G08335 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT3G28730 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G06790 | PredictedAffinity Capture-MS | FSW = 0.2061
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MS | FSW = 0.2197
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G10940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3368
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT2G20410 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.2303
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2296
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G53880 | PredictedCo-purification | FSW = 0.1523
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G54630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3425
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT1G07340 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G10280 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | UNKNOWN PROTEIN |
AT1G55300 | Predictedtwo hybrid | FSW = 0.0088
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G55810 | Predictedtwo hybrid | FSW = 0.0045
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G56090 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3120
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G04710 | Predictedtwo hybrid | FSW = 0.0042
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G26690 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE |
AT3G27110 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G58180 | Predictedtwo hybrid | FSW = 0.0116
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT4G23420 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G39500 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | PATTERN FORMATION PROTEIN PUTATIVE |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G38190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1509
| Unknown | ATCSLD4 CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G33100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1509
| Unknown | ATCSLD1 CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454