Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02740 - ( chromatin binding )
50 Proteins interacs with AT1G02740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.1610
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G67270 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1707
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G12810 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.3412
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G06720 | PredictedAffinity Capture-MS | FSW = 0.0252
| Class C:nucleus | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G47620 | PredictedPhenotypic Enhancement | FSW = 0.0723
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT3G57300 | PredictedPhenotypic Enhancement | FSW = 0.0212
| Class C:nucleus | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.0409
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT4G38130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0656
| Class C:nucleus | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G47210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1735
| Class C:nucleus | MYB FAMILY TRANSCRIPTION FACTOR |
AT2G36740 | PredictedSynthetic Lethality | FSW = 0.3894
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.0852
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G63110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppression | FSW = 0.0997
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G67120 | Predictedtwo hybrid | FSW = 0.0079
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
ATCG00830 | Predictedsynthetic growth defect | FSW = 0.0027
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.1591
| Unknown | SEC22 TRANSPORTER |
AT1G10430 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G47690 | Predictedsynthetic growth defect | FSW = 0.1528
| Unknown | ATEB1A MICROTUBULE BINDING |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.0304
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT1G08780 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1026
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1280
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G54390 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.1566
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G59890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppression | FSW = 0.1878
| Unknown | SNL5 (SIN3-LIKE 5) |
AT3G22480 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1579
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G17910 | Predictedinterologs mapping | FSW = 0.0317
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
AT4G36080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2032
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT5G09740 | PredictedReconstituted ComplexCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.1708
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G23290 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1126
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1317
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G45600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityPhenotypic Enhancement | FSW = 0.2951
| Unknown | GAS41 PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.1340
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT1G04950 | PredictedPhenotypic Enhancement | FSW = 0.0863
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G05910 | Predictedsynthetic growth defect | FSW = 0.2980
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G15130 | Predictedsynthetic growth defect | FSW = 0.0144
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G52740 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3165
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54140 | PredictedPhenotypic Enhancement | FSW = 0.2028
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G61040 | Predictedsynthetic growth defect | FSW = 0.1377
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.1063
| Unknown | SGA2 |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.1324
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.1429
| Unknown | HDA15 HISTONE DEACETYLASE |
AT4G22140 | PredictedPhenotypic Enhancement | FSW = 0.0918
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0531
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G41880 | PredictedPhenotypic Suppression | FSW = 0.0517
| Unknown | POLA3 DNA PRIMASE |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.1131
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G56740 | PredictedPhenotypic Enhancement | FSW = 0.0066
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G63610 | PredictedPhenotypic Enhancement | FSW = 0.0822
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G10450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1395
| Unknown | SNL6 (SIN3-LIKE 6) |
AT2G18000 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.3274
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT1G02690 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G17930 | PredictedAffinity Capture-MS | FSW = 0.1815
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.0415
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454