Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02780 - ( emb2386 (embryo defective 2386) structural constituent of ribosome )
56 Proteins interacs with AT1G02780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09200 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0163
| Class C:plasma membranenucleus | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT1G76040 | PredictedReconstituted Complex | FSW = 0.0150
| Class C:plasma membranenucleus | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G22630 | PredictedReconstituted Complex | FSW = 0.0070
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G27630 | PredictedAffinity Capture-MS | FSW = 0.0594
| Class C:plasma membrane | ACBP5 (ACYL-COA BINDING PROTEIN 5) ACYL-COA BINDING |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0219
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
AT3G16780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0333
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
AT4G02230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0169
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT4G09570 | PredictedAffinity Capture-MS | FSW = 0.0039
| Class C:nucleus | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT2G44860 | PredictedAffinity Capture-Western | FSW = 0.0218
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT2G15430 | PredictedReconstituted Complex | FSW = 0.0102
| Class C:nucleus | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G66656 | PredictedAffinity Capture-MS | FSW = 0.0108
| Class C:nucleus | AGL91 TRANSCRIPTION FACTOR |
AT3G20000 | PredictedAffinity Capture-Westerninterologs mappinginterologs mappinginterologs mappingAffinity Capture-Westerntwo hybridReconstituted Complex | FSW = 0.0788
| Unknown | TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL |
AT3G07680 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.0729
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G24770 | PredictedAffinity Capture-MS | FSW = 0.1276
| Unknown | VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G23340 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | CKL10 (CASEIN KINASE I-LIKE 10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G64960 | PredictedSynthetic Lethality | FSW = 0.0333
| Unknown | CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE |
AT2G39290 | Predictedco-fractionationCo-fractionation | FSW = 0.0175
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT3G06530 | PredictedReconstituted Complex | FSW = 0.0040
| Unknown | BINDING |
AT1G80190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1067
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT5G20080 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | NADH-CYTOCHROME B5 REDUCTASE PUTATIVE |
AT5G47630 | PredictedReconstituted Complex | FSW = 0.0152
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT4G22310 | PredictedReconstituted Complex | FSW = 0.0181
| Unknown | UNKNOWN PROTEIN |
AT5G20950 | PredictedReconstituted Complex | FSW = 0.0143
| Unknown | GLYCOSYL HYDROLASE FAMILY 3 PROTEIN |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G62800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0079
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G13320 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | CAX2 (CATION EXCHANGER 2) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT3G62770 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSfar western blottingAffinity Capture-WesternReconstituted ComplexSynthetic Lethalitysynthetic growth defect | FSW = 0.0442
| Unknown | ATATG18A |
AT4G04950 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G30540 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN |
AT4G34555 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.0151
| Unknown | 40S RIBOSOMAL PROTEIN S25 PUTATIVE |
AT5G06600 | Predictedinterologs mappingAffinity Capture-Western | FSW = 0.0408
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G66640 | PredictedAffinity Capture-MSAffinity Capture-MSbiochemicalReconstituted Complex | FSW = 0.0233
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT1G31300 | PredictedReconstituted Complex | FSW = 0.0180
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G196452) HAS 478 BLAST HITS TO 478 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 269 FUNGI - 98 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G33390 | PredictedReconstituted Complex | FSW = 0.0094
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT1G68200 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G75020 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4) ACYLTRANSFERASE |
AT1G79820 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G26260 | PredictedAffinity Capture-Western | FSW = 0.0174
| Unknown | AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING) |
AT3G09640 | PredictedReconstituted Complex | FSW = 0.0079
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G14090 | Predictedinterologs mapping | FSW = 0.0214
| Unknown | ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING |
AT3G16565 | Predictedinterologs mapping | FSW = 0.0286
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G63280 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0118
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G11640 | PredictedReconstituted Complex | FSW = 0.0164
| Unknown | ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) SERINE RACEMASE |
AT4G17770 | PredictedReconstituted Complex | FSW = 0.0071
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G38440 | PredictedReconstituted Complex | FSW = 0.0164
| Unknown | LOCATED IN CHLOROPLAST EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA POLYMERASE II-ASSOCIATED PROTEIN 1 C-TERMINAL (INTERPROIPR013929) RNA POLYMERASE II-ASSOCIATED PROTEIN 1 N-TERMINAL (INTERPROIPR013930) HAS 210 BLAST HITS TO 166 PROTEINS IN 68 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 135 FUNGI - 41 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 10 (SOURCE NCBI BLINK) |
AT5G01430 | PredictedAffinity Capture-Western | FSW = 0.0448
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G24840 | PredictedAffinity Capture-MS | FSW = 0.0657
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G46030 | PredictedReconstituted Complex | FSW = 0.0136
| Unknown | UNKNOWN PROTEIN |
AT5G48710 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | UBIQUITIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454