Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02840 - ( SR1 RNA binding / nucleic acid binding / nucleotide binding )

35 Proteins interacs with AT1G02840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09440

Experimental

pull down

FSW = 0.0096

Class A:

nucleus

Class B:

vacuole

plasma membrane

 HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT1G55310

Experimental

confocal microscopy

FSW = 0.4138

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR33 RNA BINDING / PROTEIN BINDING
AT3G50670

Experimental

confocal microscopy

FSW = 0.0972

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G18810

Experimental

Reconstituted Complex

in vitro

FSW = 0.4294

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G55460

Experimental

Reconstituted Complex

in vitro

FSW = 0.4119

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G13570

Experimental

Reconstituted Complex

in vitro

FSW = 0.3277

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G23860

Experimental

Reconstituted Complex

in vitro

FSW = 0.4205

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) PROTEIN BINDING
AT2G37340

Experimental

Reconstituted Complex

Reconstituted Complex

two hybrid

in vitro

FSW = 0.4444

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING
AT2G43370

Experimental

Reconstituted Complex

FSW = 0.3551

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT3G63400

Experimental

pull down

confocal microscopy

two hybrid

Reconstituted Complex

FSW = 0.2771

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT4G32420

Experimental

two hybrid

FSW = 0.2171

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT3G61860

Experimental

pull down

FSW = 0.2771

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 RSP31 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G55990

Experimental

two hybrid

Reconstituted Complex

in vitro

FSW = 0.0385

Class B:

vacuole

nucleus

 CBL2 (CALCINEURIN B-LIKE 2) CALCIUM ION BINDING
AT5G64960

Experimental

confocal microscopy

FSW = 0.0513

Class B:

unclear

nucleus

Class D:

nucleus (p = 0.78)

 CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE
AT4G33430

Experimental

pull down

FSW = 0.0175

Class B:

plasma membrane

nucleus

extracellular

 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE
AT2G16070

Experimental

pull down

FSW = 0.0842

Unknown

 PDV2 (PLASTID DIVISION2)
AT5G35410

Experimental

protein kinase assay

FSW = 0.0410

Unknown

 SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE
AT1G53720

Experimental

Reconstituted Complex

in vitro

FSW = 0.1895

Unknown

 CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.2000

Class C:

nucleus

 SR45 RNA BINDING / PROTEIN BINDING
AT3G19840

Predicted

Affinity Capture-MS

in vitro

Co-expression

FSW = 0.0320

Class C:

nucleus

 FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT5G40340

Predicted

in vivo

in vitro

FSW = 0.0224

Class C:

nucleus

 PWWP DOMAIN-CONTAINING PROTEIN
AT2G41500

Predicted

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.0130

Class C:

nucleus

 EMB2776 NUCLEOTIDE BINDING
AT5G22000

Predicted

two hybrid

FSW = 0.0806

Unknown

 RHF2A (RING-H2 GROUP F2A) PROTEIN BINDING / ZINC ION BINDING
AT3G25840

Predicted

in vitro

FSW = 0.0539

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT2G04845

Predicted

two hybrid

two hybrid

FSW = 0.0282

Unknown

 GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT4G24740

Predicted

two hybrid

FSW = 0.0980

Unknown

 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE
AT5G62600

Predicted

far western blotting

FSW = 0.0308

Unknown

 TRANSPORTIN-SR-RELATED
AT1G54380

Predicted

two hybrid

Co-expression

FSW = 0.2017

Unknown

 SPLICEOSOME PROTEIN-RELATED
AT1G60900

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.2771

Unknown

 U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT PUTATIVE
AT3G44850

Predicted

in vivo

in vivo

in vitro

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.1016

Unknown

 PROTEIN KINASE-RELATED
AT4G11970

Predicted

in vitro

two hybrid

FSW = 0.0234

Unknown

 YT521-B-LIKE FAMILY PROTEIN
AT5G42820

Predicted

in vivo

in vivo

in vitro

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.0659

Unknown

 U2AF35B RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT3G53570

Predicted

Affinity Capture-MS

in vitro

two hybrid

FSW = 0.0696

Unknown

 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G22840

Predicted

in vitro

in vivo

Co-expression

FSW = 0.0364

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT5G55310

Predicted

in vitro

in vivo

FSW = 0.0061

Unknown

 TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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