Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03020 - ( glutaredoxin family protein )

19 Proteins interacs with AT1G03020
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G27970

Predicted

synthetic growth defect

Affinity Capture-MS

FSW = 0.0121

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT5G40370

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4741

Unknown

GLUTAREDOXIN PUTATIVE
AT5G37720

Predicted

Synthetic Rescue

synthetic growth defect

FSW = 0.0053

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT5G11920

Predicted

synthetic growth defect

Affinity Capture-Western

FSW = 0.1212

Unknown

ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE
AT5G24318

Predicted

synthetic growth defect

FSW = 0.0726

Unknown

CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT3G62960

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5248

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT5G63030

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7064

Unknown

GLUTAREDOXIN PUTATIVE
AT2G47880

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8889

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT5G18600

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8889

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT3G62950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8889

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT2G30540

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8571

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15680

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8889

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15690

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8889

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15700

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8366

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15660

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8889

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT3G62930

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5926

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G06830

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4515

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15670

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.8889

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT2G47870

Predicted

Phylogenetic profile method

FSW = 0.6767

Unknown

GLUTAREDOXIN FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454