Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03110 - ( transducin family protein / WD-40 repeat family protein )

7 Proteins interacs with AT1G03110
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G38890

Predicted

synthetic growth defect

FSW = 0.1684

Unknown

DIHYDROURIDINE SYNTHASE FAMILY PROTEIN
AT3G04820

Predicted

synthetic growth defect

FSW = 0.2133

Unknown

PSEUDOURIDINE SYNTHASE
AT5G12410

Predicted

two hybrid

FSW = 0.0642

Unknown

THUMP DOMAIN-CONTAINING PROTEIN
AT5G24840

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Co-crystal Structure

interaction prediction

Co-expression

FSW = 0.0787

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT2G22400

Predicted

synthetic growth defect

FSW = 0.1259

Unknown

NOL1/NOP2/SUN FAMILY PROTEIN
AT3G49640

Predicted

synthetic growth defect

FSW = 0.1233

Unknown

FAD BINDING / CATALYTIC/ TRNA DIHYDROURIDINE SYNTHASE
AT5G67220

Predicted

synthetic growth defect

FSW = 0.1925

Unknown

NITROGEN REGULATION FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454