Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03150 - ( GCN5-related N-acetyltransferase (GNAT) family protein )
17 Proteins interacs with AT1G03150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedSynthetic Rescue | FSW = 0.0220
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G07350 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | TUDOR DOMAIN-CONTAINING PROTEIN / NUCLEASE FAMILY PROTEIN |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0105
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | Predictedtwo hybridtwo hybrid | FSW = 0.0791
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G12110 | PredictedSynthetic Rescue | FSW = 0.0322
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0055
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G53770 | Predictedtwo hybridtwo hybrid | FSW = 0.0313
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G06150 | Predictedtwo hybridtwo hybrid | FSW = 0.0068
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G61780 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | TUDOR DOMAIN-CONTAINING PROTEIN / NUCLEASE FAMILY PROTEIN |
AT2G18220 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G40700 | PredictedAffinity Capture-MS | FSW = 0.0591
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.0172
| Unknown | ENDONUCLEASE PUTATIVE |
AT1G17140 | PredictedSynthetic Rescue | FSW = 0.0571
| Unknown | TROPOMYOSIN-RELATED |
AT5G23540 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G34150 | PredictedSynthetic Lethality | FSW = 0.0157
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT5G13780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0096
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454