Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03280 - ( transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein )

31 Proteins interacs with AT1G03280
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G12610

Predicted

Co-purification

FSW = 0.1845

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0134

Class C:

nucleus

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT4G21010

Predicted

Affinity Capture-MS

Affinity Capture-Western

synthetic growth defect

two hybrid

Reconstituted Complex

Affinity Capture-MS

FSW = 0.0972

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR-RELATED
AT3G16980

Predicted

two hybrid

Synthetic Lethality

FSW = 0.0853

Class C:

nucleus

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G17020

Predicted

in vitro

Co-expression

FSW = 0.1083

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT4G24440

Predicted

in vitro

FSW = 0.1939

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S)
AT4G10710

Predicted

Affinity Capture-Western

Reconstituted Complex

interologs mapping

FSW = 0.0486

Class C:

nucleus

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670

Predicted

Affinity Capture-Western

interologs mapping

Reconstituted Complex

FSW = 0.1016

Class C:

nucleus

GTC2
AT2G41630

Predicted

in vitro

FSW = 0.0964

Class C:

nucleus

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT2G15430

Predicted

Affinity Capture-Western

FSW = 0.0598

Class C:

nucleus

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G55520

Predicted

in vitro

FSW = 0.0670

Class C:

nucleus

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT5G59230

Predicted

in vitro

FSW = 0.1994

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT1G55750

Predicted

interaction prediction

two hybrid

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

in vitro

FSW = 0.0811

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT3G05520

Predicted

Affinity Capture-MS

FSW = 0.0174

Class C:

nucleus

F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN
AT5G41360

Predicted

in vivo

in vitro

in vitro

in vivo

FSW = 0.1001

Class C:

nucleus

XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT2G42500

Predicted

Affinity Capture-MS

FSW = 0.0335

Unknown

PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G10430

Predicted

Affinity Capture-MS

FSW = 0.0278

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G23410Predicted

Affinity Capture-MS

FSW = 0.0643

Unknown

UBIQUITIN EXTENSION PROTEIN PUTATIVE / 40S RIBOSOMAL PROTEIN S27A (RPS27AA)
AT2G15400

Predicted

Affinity Capture-Western

FSW = 0.1069

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G20330

Predicted

two hybrid

two hybrid

in vitro

in vitro

two hybrid

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

in vitro

Reconstituted Complex

synthetic growth defect

interaction prediction

FSW = 0.2268

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT1G09150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0294

Unknown

PSEUDOURIDINE SYNTHASE AND ARCHAEOSINE TRANSGLYCOSYLASE (PUA) DOMAIN-CONTAINING PROTEIN
AT1G15780

Predicted

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

interologs mapping

Synthetic Lethality

two hybrid

FSW = 0.0865

Unknown

UNKNOWN PROTEIN
AT1G26520

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COBALAMIN (VITAMIN B12) BIOSYNTHESIS COBW-LIKE (INTERPROIPR003495) COBALAMIN (VITAMIN B12) BIOSYNTHESIS COBW-LIKE C-TERMINAL (INTERPROIPR011629) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR L PUTATIVE (TAIRAT1G157301) HAS 5407 BLAST HITS TO 5334 PROTEINS IN 932 SPECIES ARCHAE - 52 BACTERIA - 3259 METAZOA - 131 FUNGI - 175 PLANTS - 131 VIRUSES - 0 OTHER EUKARYOTES - 1659 (SOURCE NCBI BLINK)
AT1G52740

Predicted

Affinity Capture-MS

FSW = 0.0251

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT2G20000

Predicted

Affinity Capture-MS

FSW = 0.0198

Unknown

HBT (HOBBIT) BINDING
AT1G55150

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT2G47110Predicted

Affinity Capture-MS

FSW = 0.0321

Unknown

UBQ6 PROTEIN BINDING
AT3G16080

Predicted

Affinity Capture-MS

FSW = 0.0605

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37C)
AT4G27640

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT1G15250

Predicted

Affinity Capture-MS

FSW = 0.0552

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37A)
AT1G15730

Predicted

Affinity Capture-MS

FSW = 0.0250

Unknown

PRLI-INTERACTING FACTOR L PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454