Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03280 - ( transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein )
31 Proteins interacs with AT1G03280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G12610 | PredictedCo-purification | FSW = 0.1845
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0134
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G21010 | PredictedAffinity Capture-MSAffinity Capture-Westernsynthetic growth defecttwo hybridReconstituted ComplexAffinity Capture-MS | FSW = 0.0972
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT3G16980 | Predictedtwo hybridSynthetic Lethality | FSW = 0.0853
| Class C:nucleus | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G17020 | Predictedin vitroCo-expression | FSW = 0.1083
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT4G24440 | Predictedin vitro | FSW = 0.1939
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S) |
AT4G10710 | PredictedAffinity Capture-WesternReconstituted Complexinterologs mapping | FSW = 0.0486
| Class C:nucleus | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | PredictedAffinity Capture-Westerninterologs mappingReconstituted Complex | FSW = 0.1016
| Class C:nucleus | GTC2 |
AT2G41630 | Predictedin vitro | FSW = 0.0964
| Class C:nucleus | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G15430 | PredictedAffinity Capture-Western | FSW = 0.0598
| Class C:nucleus | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G55520 | Predictedin vitro | FSW = 0.0670
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT5G59230 | Predictedin vitro | FSW = 0.1994
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT1G55750 | Predictedinteraction predictiontwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingin vitro | FSW = 0.0811
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT3G05520 | PredictedAffinity Capture-MS | FSW = 0.0174
| Class C:nucleus | F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN |
AT5G41360 | Predictedin vivoin vitroin vitroin vivo | FSW = 0.1001
| Class C:nucleus | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G42500 | PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G23410 | PredictedAffinity Capture-MS | FSW = 0.0643
| Unknown | UBIQUITIN EXTENSION PROTEIN PUTATIVE / 40S RIBOSOMAL PROTEIN S27A (RPS27AA) |
AT2G15400 | PredictedAffinity Capture-Western | FSW = 0.1069
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G20330 | Predictedtwo hybridtwo hybridin vitroin vitrotwo hybridAffinity Capture-MSAffinity Capture-Westerninterologs mappingin vitroReconstituted Complexsynthetic growth defectinteraction prediction | FSW = 0.2268
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G09150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0294
| Unknown | PSEUDOURIDINE SYNTHASE AND ARCHAEOSINE TRANSGLYCOSYLASE (PUA) DOMAIN-CONTAINING PROTEIN |
AT1G15780 | PredictedReconstituted ComplexAffinity Capture-WesternReconstituted Complexinterologs mappingSynthetic Lethalitytwo hybrid | FSW = 0.0865
| Unknown | UNKNOWN PROTEIN |
AT1G26520 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COBALAMIN (VITAMIN B12) BIOSYNTHESIS COBW-LIKE (INTERPROIPR003495) COBALAMIN (VITAMIN B12) BIOSYNTHESIS COBW-LIKE C-TERMINAL (INTERPROIPR011629) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR L PUTATIVE (TAIRAT1G157301) HAS 5407 BLAST HITS TO 5334 PROTEINS IN 932 SPECIES ARCHAE - 52 BACTERIA - 3259 METAZOA - 131 FUNGI - 175 PLANTS - 131 VIRUSES - 0 OTHER EUKARYOTES - 1659 (SOURCE NCBI BLINK) |
AT1G52740 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G20000 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | HBT (HOBBIT) BINDING |
AT1G55150 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT2G47110 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | UBQ6 PROTEIN BINDING |
AT3G16080 | PredictedAffinity Capture-MS | FSW = 0.0605
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37C) |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT1G15250 | PredictedAffinity Capture-MS | FSW = 0.0552
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37A) |
AT1G15730 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | PRLI-INTERACTING FACTOR L PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454