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AT1G03330 - ( small nuclear ribonucleoprotein D putative / snRNP core SM-like protein putative / U6 snRNA-associated Sm-like protein putative )

56 Proteins interacs with AT1G03330

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G07590	Predicted Affinity Capture-MS Co-expression	FSW = 0.2246	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2929	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3306	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G12780	Predicted Protein-RNA	FSW = 0.1227	Class C: nucleus	PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT5G08290	Predicted Affinity Capture-MS	FSW = 0.3519	Class C: nucleus	YLS8 CATALYTIC
AT2G43810	Predicted interaction prediction two hybrid two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS interologs mapping Co-expression	FSW = 0.2091	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G27720	Predicted two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping interaction prediction	FSW = 0.3237	Class C: nucleus	EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G76860	Predicted Affinity Capture-MS two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS interologs mapping interaction prediction Co-expression	FSW = 0.4741	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30330	Predicted two hybrid	FSW = 0.3016	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G21190	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3141	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G18740	Predicted two hybrid Co-expression	FSW = 0.2693	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G47640	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2401	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT1G28060	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3265	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G20580	Predicted Affinity Capture-MS interaction prediction	FSW = 0.3348	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G19120	Predicted interaction prediction two hybrid two hybrid two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Co-purification interologs mapping Co-expression	FSW = 0.2445	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G14080	Predicted two hybrid	FSW = 0.0875	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping interaction prediction Co-expression	FSW = 0.2935	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G04510	Predicted Co-purification	FSW = 0.1950	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G65700	Predicted two hybrid two hybrid Co-expression	FSW = 0.1142	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870	Predicted interaction prediction two hybrid two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Co-expression	FSW = 0.3623	Class C: nucleus	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0114	Class C: nucleus	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G41500	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3278	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT3G20010	Predicted two hybrid interaction prediction	FSW = 0.0171	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G11100	Predicted two hybrid	FSW = 0.0180	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED
AT1G01300	Predicted two hybrid	FSW = 0.0271	Unknown	ASPARTYL PROTEASE FAMILY PROTEIN
AT1G09830	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0169	Unknown	PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (PUR2)
AT2G33340	Predicted Co-purification	FSW = 0.1837	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2967	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT2G37600	Predicted two hybrid interaction prediction	FSW = 0.0062	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT4G30550	Predicted two hybrid	FSW = 0.0164	Unknown	GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN
AT3G10090	Predicted two hybrid interologs mapping interaction prediction	FSW = 0.0286	Unknown	40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT1G60170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4122	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT2G36930	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0034	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT5G41770	Predicted Affinity Capture-MS	FSW = 0.1050	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT1G04020	Predicted two hybrid	FSW = 0.0128	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04170	Predicted interaction prediction two hybrid	FSW = 0.0181	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G21170	Predicted two hybrid	FSW = 0.0085	Unknown	SEC5B
AT1G29150	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0161	Unknown	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G49760	Predicted Affinity Capture-MS	FSW = 0.0603	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT2G45330	Predicted two hybrid interaction prediction	FSW = 0.0177	Unknown	EMB1067 (EMBRYO DEFECTIVE 1067) TRNA 2-PHOSPHOTRANSFERASE/ TRANSFERASE TRANSFERRING PHOSPHORUS-CONTAINING GROUPS
AT3G02460	Predicted two hybrid	FSW = 0.0174	Unknown	PLANT ADHESION MOLECULE PUTATIVE
AT3G05760	Predicted Affinity Capture-MS	FSW = 0.1594	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G12760	Predicted two hybrid	FSW = 0.0240	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK)
AT3G21060	Predicted two hybrid interaction prediction	FSW = 0.0075	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G00660	Predicted interaction prediction Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid	FSW = 0.1533	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT4G03430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2816	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G34450	Predicted two hybrid interaction prediction	FSW = 0.0058	Unknown	COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT5G03850	Predicted two hybrid	FSW = 0.0356	Unknown	40S RIBOSOMAL PROTEIN S28 (RPS28B)
AT5G13570	Predicted interaction prediction two hybrid	FSW = 0.0895	Unknown	DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G38890	Predicted Synthetic Rescue	FSW = 0.0201	Unknown	EXORIBONUCLEASE-RELATED
AT5G63610	Predicted two hybrid interaction prediction	FSW = 0.0069	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G02530	Predicted Affinity Capture-MS	FSW = 0.0052	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G45810	Predicted Affinity Capture-MS Affinity Capture-MS two hybrid	FSW = 0.0851	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G22760	Predicted Affinity Capture-MS	FSW = 0.0682	Unknown	PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT2G23960	Predicted two hybrid	FSW = 0.0159	Unknown	DEFENSE-RELATED PROTEIN PUTATIVE
AT5G15770	Predicted interaction prediction	FSW = 0.1582	Unknown	ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G03330 - ( small nuclear ribonucleoprotein D putative / snRNP core SM-like protein putative / U6 snRNA-associated Sm-like protein putative )

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Fasta sequences:

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FSW

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How to cite