Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03360 - ( ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA binding / exonuclease )
25 Proteins interacs with AT1G03360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G60500 | Experimental | FSW = 0.3086
| Unknown | CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT3G61620 | ExperimentalReconstituted Complexin vitro | FSW = 0.6563
| Unknown | RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT2G25355 | Experimental | FSW = 0.4025
| Unknown | EXONUCLEASE-RELATED |
AT3G07750 | Experimental | FSW = 0.3712
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT1G60080 | Experimental | FSW = 0.1778
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT3G46210 | Experimental | FSW = 0.3126
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT4G27490 | Experimental | FSW = 0.2828
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT3G02090 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0318
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT3G12580 | Predictedinteraction prediction | FSW = 0.0091
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT5G47010 | PredictedAffinity Capture-Western | FSW = 0.0900
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT5G35910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.1182
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT3G06720 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0948
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G65440 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.2336
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT4G08350 | PredictedAffinity Capture-Western | FSW = 0.0222
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT1G54440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2584
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT2G32415 | PredictedAffinity Capture-Western | FSW = 0.1125
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT5G38890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.1785
| Unknown | EXORIBONUCLEASE-RELATED |
AT1G33980 | PredictedAffinity Capture-Western | FSW = 0.2250
| Unknown | SMG-4/UPF3 FAMILY PROTEIN |
AT2G39260 | PredictedAffinity Capture-Western | FSW = 0.1216
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT4G10070 | PredictedAffinity Capture-Western | FSW = 0.0540
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT1G59760 | PredictedPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.1237
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT2G17510 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinterologs mapping | FSW = 0.2685
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT4G32175 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4831
| Unknown | RNA BINDING |
AT3G12990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3989
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT1G02690 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0602
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454