Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03457 - ( RNA-binding protein putative )

15 Proteins interacs with AT1G03457
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G14000

Predicted

Gene fusion method

FSW = 0.1481

Unknown

VIK (VH1-INTERACTING KINASE) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT2G34650

Predicted

Gene fusion method

FSW = 0.2976

Unknown

PID (PINOID) KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G69220

Predicted

two hybrid

FSW = 0.0212

Unknown

SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G64390

Predicted

two hybrid

FSW = 0.0504

Unknown

HEN4 (HUA ENHANCER 4) RNA BINDING / NUCLEIC ACID BINDING
AT2G44200

Predicted

two hybrid

FSW = 0.0342

Unknown

UNKNOWN PROTEIN
AT4G03110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1457

Unknown

RNA-BINDING PROTEIN PUTATIVE
AT4G35500

Predicted

Gene fusion method

FSW = 0.3850

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G03510

Predicted

Gene fusion method

FSW = 0.3158

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G61160

Predicted

Gene fusion method

FSW = 0.0635

Unknown

SHAGGY-RELATED PROTEIN KINASE BETA / ASK-BETA (ASK2)
AT3G49180

Predicted

Gene fusion method

FSW = 0.4329

Unknown

RID3 (ROOT INITIATION DEFECTIVE 3) NUCLEOTIDE BINDING
AT5G60940

Predicted

Gene fusion method

FSW = 0.0758

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G35960

Predicted

Gene fusion method

FSW = 0.2222

Unknown

PROTEIN KINASE PUTATIVE
AT3G23280

Predicted

Gene fusion method

FSW = 0.4329

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN
AT4G30440

Predicted

Gene fusion method

FSW = 0.1481

Unknown

GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1) UDP-GLUCURONATE 4-EPIMERASE/ CATALYTIC
AT3G23000

Predicted

Gene fusion method

FSW = 0.0593

Unknown

CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454