Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03680 - ( ATHM1 enzyme activator )
36 Proteins interacs with AT1G03680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G09320 | Predictedtandem affinity purification | FSW = 0.0262
| Class C:plastid | NDPK1 ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
AT5G08670 | Predictedtandem affinity purification | FSW = 0.0817
| Class C:plastid | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT5G20720 | Predictedtandem affinity purification | FSW = 0.0923
| Class C:plastid | CPN20 (CHAPERONIN 20) CALMODULIN BINDING |
ATCG00120 | Predictedtandem affinity purification | FSW = 0.0527
| Class C:plastid | ENCODES THE ATPASE ALPHA SUBUNIT WHICH IS A SUBUNIT OF ATP SYNTHASE AND PART OF THE CF1 PORTION WHICH CATALYZES THE CONVERSION OF ADP TO ATP USING THE PROTON MOTIVE FORCE THIS COMPLEX IS LOCATED IN THE THYLAKOID MEMBRANE OF THE CHLOROPLAST |
AT2G21170 | Predictedtandem affinity purification | FSW = 0.0186
| Class C:plastid | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
AT5G23140 | Predictedtandem affinity purification | FSW = 0.0214
| Class C:plastid | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
AT1G62750 | Predictedtandem affinity purification | FSW = 0.1288
| Class C:plastid | SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT4G17740 | Predictedtandem affinity purification | FSW = 0.0220
| Class C:plastid | C-TERMINAL PROCESSING PROTEASE PUTATIVE |
AT1G80480 | Predictedtandem affinity purification | FSW = 0.0229
| Class C:plastid | PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) |
AT2G22230 | Predictedtandem affinity purification | FSW = 0.0520
| Class C:plastid | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
AT1G12230 | Predictedtandem affinity purification | FSW = 0.0274
| Class C:plastid | TRANSALDOLASE PUTATIVE |
AT3G08740 | Predictedtandem affinity purification | FSW = 0.0220
| Class C:plastid | ELONGATION FACTOR P (EF-P) FAMILY PROTEIN |
AT1G79050 | Predictedtandem affinity purification | FSW = 0.1768
| Class C:plastid | DNA REPAIR PROTEIN RECA |
AT2G05990 | Predictedtandem affinity purification | FSW = 0.0229
| Class C:plastid | MOD1 (MOSAIC DEATH 1) ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (NADH)/ ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE/ OXIDOREDUCTASE |
AT3G18680 | Predictedtandem affinity purification | FSW = 0.0627
| Class C:plastid | ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN |
AT5G55280 | Predictedtandem affinity purification | FSW = 0.1047
| Class C:plastid | FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE |
AT1G24360 | Predictedtandem affinity purification | FSW = 0.0262
| Class C:plastid | 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE |
AT2G41680 | Predictedx-ray crystallography | FSW = 0.0229
| Class C:plastid | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C) THIOREDOXIN-DISULFIDE REDUCTASE |
AT5G03940 | Predictedtandem affinity purification | FSW = 0.0321
| Class C:plastid | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING |
AT3G54440 | Predictedtandem affinity purification | FSW = 0.0171
| Class C:plastid | GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN |
AT2G36530 | Predictedtandem affinity purification | FSW = 0.0136
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT1G79530 | Predictedtandem affinity purification | FSW = 0.0128
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G52640 | Predictedtandem affinity purification | FSW = 0.0022
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G09210 | Predictedtandem affinity purification | FSW = 0.0128
| Unknown | PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR |
AT5G23250 | Predictedtandem affinity purification | FSW = 0.0923
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE |
AT5G57300 | Predictedtandem affinity purification | FSW = 0.0245
| Unknown | UBIE/COQ5 METHYLTRANSFERASE FAMILY PROTEIN |
AT4G11120 | Predictedtandem affinity purification | FSW = 0.0824
| Unknown | TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE |
AT2G20420 | Predictedtandem affinity purification | FSW = 0.0600
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE |
AT5G66760 | Predictedtandem affinity purification | FSW = 0.0355
| Unknown | SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE |
AT3G25220 | Predictedtandem affinity purification | FSW = 0.0245
| Unknown | FKBP15-1 FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G21790 | Predictedtandem affinity purification | FSW = 0.0128
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT1G67710 | Predictedtandem affinity purification | FSW = 0.0269
| Unknown | ARR11 (RESPONSE REGULATOR 11) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G04880 | Predictedtandem affinity purification | FSW = 0.0563
| Unknown | ADENOSINE/AMP DEAMINASE FAMILY PROTEIN |
AT4G35970 | Predictedtandem affinity purification | FSW = 0.0256
| Unknown | APX5 (ASCORBATE PEROXIDASE 5) L-ASCORBATE PEROXIDASE/ HEME BINDING / PEROXIDASE |
AT4G36020 | Predictedtandem affinity purification | FSW = 0.0085
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT5G23070 | Predictedtandem affinity purification | FSW = 0.0224
| Unknown | THYMIDINE KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454