Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03680 - ( ATHM1 enzyme activator )

36 Proteins interacs with AT1G03680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G09320

Predicted

tandem affinity purification

FSW = 0.0262

Class C:

plastid

NDPK1 ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE
AT5G08670

Predicted

tandem affinity purification

FSW = 0.0817

Class C:

plastid

ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT5G20720

Predicted

tandem affinity purification

FSW = 0.0923

Class C:

plastid

CPN20 (CHAPERONIN 20) CALMODULIN BINDING
ATCG00120Predicted

tandem affinity purification

FSW = 0.0527

Class C:

plastid

ENCODES THE ATPASE ALPHA SUBUNIT WHICH IS A SUBUNIT OF ATP SYNTHASE AND PART OF THE CF1 PORTION WHICH CATALYZES THE CONVERSION OF ADP TO ATP USING THE PROTON MOTIVE FORCE THIS COMPLEX IS LOCATED IN THE THYLAKOID MEMBRANE OF THE CHLOROPLAST
AT2G21170

Predicted

tandem affinity purification

FSW = 0.0186

Class C:

plastid

TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE
AT5G23140

Predicted

tandem affinity purification

FSW = 0.0214

Class C:

plastid

NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT1G62750

Predicted

tandem affinity purification

FSW = 0.1288

Class C:

plastid

SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT4G17740

Predicted

tandem affinity purification

FSW = 0.0220

Class C:

plastid

C-TERMINAL PROCESSING PROTEASE PUTATIVE
AT1G80480

Predicted

tandem affinity purification

FSW = 0.0229

Class C:

plastid

PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17)
AT2G22230

Predicted

tandem affinity purification

FSW = 0.0520

Class C:

plastid

BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT1G12230

Predicted

tandem affinity purification

FSW = 0.0274

Class C:

plastid

TRANSALDOLASE PUTATIVE
AT3G08740

Predicted

tandem affinity purification

FSW = 0.0220

Class C:

plastid

ELONGATION FACTOR P (EF-P) FAMILY PROTEIN
AT1G79050

Predicted

tandem affinity purification

FSW = 0.1768

Class C:

plastid

DNA REPAIR PROTEIN RECA
AT2G05990

Predicted

tandem affinity purification

FSW = 0.0229

Class C:

plastid

MOD1 (MOSAIC DEATH 1) ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (NADH)/ ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE/ OXIDOREDUCTASE
AT3G18680

Predicted

tandem affinity purification

FSW = 0.0627

Class C:

plastid

ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT5G55280

Predicted

tandem affinity purification

FSW = 0.1047

Class C:

plastid

FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT1G24360

Predicted

tandem affinity purification

FSW = 0.0262

Class C:

plastid

3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE
AT2G41680

Predicted

x-ray crystallography

FSW = 0.0229

Class C:

plastid

NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C) THIOREDOXIN-DISULFIDE REDUCTASE
AT5G03940

Predicted

tandem affinity purification

FSW = 0.0321

Class C:

plastid

CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING
AT3G54440

Predicted

tandem affinity purification

FSW = 0.0171

Class C:

plastid

GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN
AT2G36530

Predicted

tandem affinity purification

FSW = 0.0136

Unknown

LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT1G79530

Predicted

tandem affinity purification

FSW = 0.0128

Unknown

GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G52640

Predicted

tandem affinity purification

FSW = 0.0022

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G09210

Predicted

tandem affinity purification

FSW = 0.0128

Unknown

PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT5G23250

Predicted

tandem affinity purification

FSW = 0.0923

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT5G57300

Predicted

tandem affinity purification

FSW = 0.0245

Unknown

UBIE/COQ5 METHYLTRANSFERASE FAMILY PROTEIN
AT4G11120

Predicted

tandem affinity purification

FSW = 0.0824

Unknown

TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE
AT2G20420

Predicted

tandem affinity purification

FSW = 0.0600

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE
AT5G66760

Predicted

tandem affinity purification

FSW = 0.0355

Unknown

SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE
AT3G25220

Predicted

tandem affinity purification

FSW = 0.0245

Unknown

FKBP15-1 FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G21790

Predicted

tandem affinity purification

FSW = 0.0128

Unknown

RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT1G67710

Predicted

tandem affinity purification

FSW = 0.0269

Unknown

ARR11 (RESPONSE REGULATOR 11) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR
AT4G04880

Predicted

tandem affinity purification

FSW = 0.0563

Unknown

ADENOSINE/AMP DEAMINASE FAMILY PROTEIN
AT4G35970

Predicted

tandem affinity purification

FSW = 0.0256

Unknown

APX5 (ASCORBATE PEROXIDASE 5) L-ASCORBATE PEROXIDASE/ HEME BINDING / PEROXIDASE
AT4G36020

Predicted

tandem affinity purification

FSW = 0.0085

Unknown

CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G23070

Predicted

tandem affinity purification

FSW = 0.0224

Unknown

THYMIDINE KINASE PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454