Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03910 - ( EXPRESSED IN 25 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Cactin central region (InterProIPR018816) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G368152) Has 11516 Blast hits to 6722 proteins in 356 species Archae - 23 Bacteria - 259 Metazoa - 6122 Fungi - 1009 Plants - 493 Viruses - 33 Other Eukaryotes - 3577 (source NCBI BLink) )

27 Proteins interacs with AT1G03910
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G17880

Predicted

two hybrid

two hybrid

FSW = 0.0415

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE
AT2G33370Predicted

two hybrid

two hybrid

FSW = 0.0232

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT2G35690

Predicted

two hybrid

two hybrid

FSW = 0.0344

Unknown

ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT4G16760

Predicted

two hybrid

FSW = 0.0513

Unknown

ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.0228

Unknown

SR45 RNA BINDING / PROTEIN BINDING
AT4G20440

Predicted

two hybrid

two hybrid

FSW = 0.0137

Unknown

SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B)
AT5G44500

Predicted

two hybrid

FSW = 0.0090

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT1G10320

Predicted

two hybrid

two hybrid

FSW = 0.1931

Unknown

U2 SNRNP AUXILIARY FACTOR-RELATED
AT5G17690

Predicted

two hybrid

FSW = 0.0465

Unknown

TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G30775

Predicted

two hybrid

FSW = 0.1177

Unknown

ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE
AT5G38710

Predicted

two hybrid

FSW = 0.0645

Unknown

PROLINE OXIDASE PUTATIVE / OSMOTIC STRESS-RESPONSIVE PROLINE DEHYDROGENASE PUTATIVE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0104

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT2G47350

Predicted

two hybrid

two hybrid

FSW = 0.0645

Unknown

PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE) FAMILY PROTEIN
AT3G27530

Predicted

two hybrid

two hybrid

FSW = 0.0394

Unknown

GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER
AT3G55480

Predicted

two hybrid

FSW = 0.0769

Unknown

ADAPTIN FAMILY PROTEIN
AT1G15200

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.1318

Unknown

PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN
AT1G26590

Predicted

two hybrid

FSW = 0.0282

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT1G34370

Predicted

two hybrid

FSW = 0.0167

Unknown

STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G34780Predicted

two hybrid

FSW = 0.0627

Unknown

MEE22 (MATERNAL EFFECT EMBRYO ARREST 22)
AT3G04400

Predicted

two hybrid

FSW = 0.0683

Unknown

EMB2171 (EMBRYO DEFECTIVE 2171) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G23535

Predicted

two hybrid

two hybrid

FSW = 0.0213

Unknown

KOW DOMAIN-CONTAINING PROTEIN
AT5G41770

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0361

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G61970

Predicted

two hybrid

two hybrid

FSW = 0.0909

Unknown

SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED
AT5G63440

Predicted

two hybrid

FSW = 0.0269

Unknown

UNKNOWN PROTEIN
AT2G28840

Predicted

Phenotypic Enhancement

FSW = 0.0323

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G61150

Predicted

two hybrid

FSW = 0.0447

Unknown

HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT5G03470

Predicted

two hybrid

FSW = 0.0296

Unknown

ATB ALPHA PROTEIN PHOSPHATASE TYPE 2A REGULATOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454