Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03910 - ( EXPRESSED IN 25 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Cactin central region (InterProIPR018816) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G368152) Has 11516 Blast hits to 6722 proteins in 356 species Archae - 23 Bacteria - 259 Metazoa - 6122 Fungi - 1009 Plants - 493 Viruses - 33 Other Eukaryotes - 3577 (source NCBI BLink) )
27 Proteins interacs with AT1G03910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G17880 | Predictedtwo hybridtwo hybrid | FSW = 0.0415
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
AT2G33370 | Predictedtwo hybridtwo hybrid | FSW = 0.0232
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT2G35690 | Predictedtwo hybridtwo hybrid | FSW = 0.0344
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT1G16610 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | SR45 RNA BINDING / PROTEIN BINDING |
AT4G20440 | Predictedtwo hybridtwo hybrid | FSW = 0.0137
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT5G44500 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT1G10320 | Predictedtwo hybridtwo hybrid | FSW = 0.1931
| Unknown | U2 SNRNP AUXILIARY FACTOR-RELATED |
AT5G17690 | Predictedtwo hybrid | FSW = 0.0465
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G30775 | Predictedtwo hybrid | FSW = 0.1177
| Unknown | ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE |
AT5G38710 | Predictedtwo hybrid | FSW = 0.0645
| Unknown | PROLINE OXIDASE PUTATIVE / OSMOTIC STRESS-RESPONSIVE PROLINE DEHYDROGENASE PUTATIVE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0104
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT2G47350 | Predictedtwo hybridtwo hybrid | FSW = 0.0645
| Unknown | PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT3G27530 | Predictedtwo hybridtwo hybrid | FSW = 0.0394
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT3G55480 | Predictedtwo hybrid | FSW = 0.0769
| Unknown | ADAPTIN FAMILY PROTEIN |
AT1G15200 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.1318
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
AT1G26590 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G34370 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G34780 | Predictedtwo hybrid | FSW = 0.0627
| Unknown | MEE22 (MATERNAL EFFECT EMBRYO ARREST 22) |
AT3G04400 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | EMB2171 (EMBRYO DEFECTIVE 2171) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G23535 | Predictedtwo hybridtwo hybrid | FSW = 0.0213
| Unknown | KOW DOMAIN-CONTAINING PROTEIN |
AT5G41770 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0361
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G61970 | Predictedtwo hybridtwo hybrid | FSW = 0.0909
| Unknown | SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED |
AT5G63440 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | UNKNOWN PROTEIN |
AT2G28840 | PredictedPhenotypic Enhancement | FSW = 0.0323
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G61150 | Predictedtwo hybrid | FSW = 0.0447
| Unknown | HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G03470 | Predictedtwo hybrid | FSW = 0.0296
| Unknown | ATB ALPHA PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454