Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03920 - ( protein kinase putative )
18 Proteins interacs with AT1G03920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G28710 | PredictedAffinity Capture-MS | FSW = 0.0094
| Class C:plasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT5G15680 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.0795
| Class C:plasma membrane | BINDING |
AT1G20970 | Predictedtwo hybrid | FSW = 0.0218
| Class C:plasma membrane | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT4G14350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2095
| Class C:plasma membrane | PROTEIN KINASE FAMILY PROTEIN |
AT3G23310 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2792
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
AT5G60790 | Predictedtwo hybrid | FSW = 0.0224
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
AT2G45200 | Predictedsynthetic growth defect | FSW = 0.0339
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G18200 | PredictedAffinity Capture-MS | FSW = 0.1498
| Unknown | UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE |
AT1G10350 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G27000 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G16330 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0606
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G09460 | Predictedsynthetic growth defect | FSW = 0.0273
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT4G19050 | Predictedtwo hybrid | FSW = 0.1546
| Unknown | ATP BINDING / PROTEIN BINDING |
AT2G19400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4434
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G30640 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4712
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G09890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5026
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G33080 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4694
| Unknown | PROTEIN KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454