Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G03930 - ( ADK1 (dual specificity kinase 1) kinase/ protein serine/threonine/tyrosine kinase )
69 Proteins interacs with AT1G03930| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G15200
   | PredictedAffinity Capture-MS | FSW = 0.0644
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.0308
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT2G04390
| PredictedAffinity Capture-MS | FSW = 0.0463
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
| AT1G21700
| Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0063
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
| AT3G07050
| PredictedAffinity Capture-MS | FSW = 0.0149
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
| AT1G79830
| PredictedAffinity Capture-MS | FSW = 0.0150
| Class C:nucleus | GC5 (GOLGIN CANDIDATE 5) PROTEIN BINDING |
| AT5G09650
| PredictedAffinity Capture-MS | FSW = 0.0126
| Class C:cytosol | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT2G14120
| PredictedAffinity Capture-MS | FSW = 0.0211
| Class C:cytosol | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | HISTONE H4 |
| AT2G31610
| PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
| AT2G05710
| PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
| AT1G20260
| PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT2G01470
| PredictedSynthetic Rescue | FSW = 0.0150
| Unknown | STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.0407
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0034
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G64200
| PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT5G64960
| PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE |
| AT1G18080
| PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | ATARCA NUCLEOTIDE BINDING |
| AT2G43750
| PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
| AT4G35800
| PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0089
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT3G29320
| PredictedAffinity Capture-MS | FSW = 0.0432
| Unknown | GLUCAN PHOSPHORYLASE PUTATIVE |
| AT1G80190
| PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
| AT1G20760
| PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT1G20970 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
| AT2G25070
| PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
| AT1G07180
| Predictedinterologs mapping | FSW = 0.0076
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
| AT3G03490
| PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | PEX19-1 (PEROXIN 19-1) |
| AT2G42520
| PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G53240
| PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
| AT2G19980
| PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT2G29540
| PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT4G17190
| PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT5G20850
| Predictedtwo hybrid | FSW = 0.0011
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
| AT3G58180
| PredictedSynthetic LethalitySynthetic Rescue | FSW = 0.0298
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
| AT3G59845
| Predictedinterologs mapping | FSW = 0.0170
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G15070
| PredictedSynthetic Lethality | FSW = 0.0155
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT3G51270
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1434
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
| AT1G31660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0897
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G49540
| PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | NUCLEOTIDE BINDING |
| AT3G59410
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0176
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G13680
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0392
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
| AT3G09720
| PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G42440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1164
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT3G10530
| PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G47420
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0842
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
| AT1G07990
| PredictedAffinity Capture-MS | FSW = 0.0789
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
| AT5G13570
| PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
| AT3G12340
| PredictedAffinity Capture-MSEnriched domain pair | FSW = 0.0412
| Unknown | FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT5G27470
| PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | SERYL-TRNA SYNTHETASE / SERINE--TRNA LIGASE |
| AT4G26780
| PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
| AT1G74310
| PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G33040
| PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
| AT5G10660
| PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | CALMODULIN-BINDING PROTEIN-RELATED |
| AT3G05540
| PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
| AT2G23070
| PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT1G50370
| PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
| AT2G43650
| PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
| AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
| AT2G15230
| PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
| AT2G29400
| PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G05520
| PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | TRANSPORT PROTEIN PUTATIVE |
| AT5G46180
| PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE |
| AT1G09460
| PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
| AT5G64670
| PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
| AT5G50320
| PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0243
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
| AT3G02300
| PredictedGene fusion method | FSW = 0.0480
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
| AT3G26500
| PredictedGene fusion method | FSW = 0.0222
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
| AT1G53330
| PredictedGene fusion method | FSW = 0.0480
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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