Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G04130 - ( tetratricopeptide repeat (TPR)-containing protein )

19 Proteins interacs with AT1G04130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G12580

Predicted

Reconstituted Complex

FSW = 0.0515

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT5G56000

Predicted

two hybrid

FSW = 0.0714

Unknown

HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT1G16030

Predicted

Reconstituted Complex

FSW = 0.0490

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G58610

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0155

Unknown

KETOL-ACID REDUCTOISOMERASE
AT1G17745

Predicted

interaction prediction

two hybrid

FSW = 0.0295

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT5G56030

Predicted

interologs mapping

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0471

Unknown

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G52640

Predicted

two hybrid

interologs mapping

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

two hybrid

two hybrid

Affinity Capture-Western

Reconstituted Complex

two hybrid

Reconstituted Complex

Affinity Capture-MS

interologs mapping

synthetic growth defect

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0215

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G26110

Predicted

Affinity Capture-MS

FSW = 0.0365

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT2G19480

Predicted

Affinity Capture-MS

FSW = 0.0162

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT2G45490

Predicted

biochemical

FSW = 0.0307

Unknown

ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT1G60070

Predicted

two hybrid

two hybrid

FSW = 0.0383

Unknown

BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT5G60340Predicted

two hybrid

two hybrid

FSW = 0.0169

Unknown

MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT1G72310

Predicted

Affinity Capture-MS

FSW = 0.0345

Unknown

ATL3 PROTEIN BINDING / ZINC ION BINDING
AT2G37840

Predicted

biochemical

FSW = 0.0346

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G01090

Predicted

biochemical

FSW = 0.0458

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT5G22840

Predicted

biochemical

FSW = 0.0241

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G14300

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0803

Unknown

BINDING
AT1G32750

Predicted

two hybrid

FSW = 0.0275

Unknown

HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G74310

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0976

Unknown

ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454