Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G04130 - ( tetratricopeptide repeat (TPR)-containing protein )
19 Proteins interacs with AT1G04130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12580 | PredictedReconstituted Complex | FSW = 0.0515
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT5G56000 | Predictedtwo hybrid | FSW = 0.0714
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT1G16030 | PredictedReconstituted Complex | FSW = 0.0490
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT3G58610 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0155
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT1G17745 | Predictedinteraction predictiontwo hybrid | FSW = 0.0295
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT5G56030 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0471
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G52640 | Predictedtwo hybridinterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-WesternReconstituted Complextwo hybridReconstituted ComplexAffinity Capture-MSinterologs mappingsynthetic growth defectinteraction predictionEnriched domain pairCo-expression | FSW = 0.0215
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G26110 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT2G45490 | Predictedbiochemical | FSW = 0.0307
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT1G60070 | Predictedtwo hybridtwo hybrid | FSW = 0.0383
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G60340 | Predictedtwo hybridtwo hybrid | FSW = 0.0169
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT1G72310 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | ATL3 PROTEIN BINDING / ZINC ION BINDING |
AT2G37840 | Predictedbiochemical | FSW = 0.0346
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G01090 | Predictedbiochemical | FSW = 0.0458
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G22840 | Predictedbiochemical | FSW = 0.0241
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G14300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0803
| Unknown | BINDING |
AT1G32750 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT1G74310 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0976
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454