Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G04420 - ( aldo/keto reductase family protein )

5 Proteins interacs with AT1G04420
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

pull down

FSW = 0.0219

Class C:

plastid

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT1G04690

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1390

Unknown

KAB1 (POTASSIUM CHANNEL BETA SUBUNIT) OXIDOREDUCTASE/ POTASSIUM CHANNEL
AT1G72050

Predicted

Gene fusion method

FSW = 0.0262

Unknown

TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G22210Predicted

pull down

FSW = 0.0697

Unknown

TREHALOSE-6-PHOSPHATE PHOSPHATASE PUTATIVE
AT1G60680

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0226

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454