Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G04810 - ( 26S proteasome regulatory subunit putative )

36 Proteins interacs with AT1G04810
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.4347

Class C:

plasma membrane

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G45000

Predicted

Affinity Capture-MS

FSW = 0.5209

Class C:

plasma membrane

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT5G52640

Predicted

interologs mapping

synthetic growth defect

FSW = 0.0118

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G20580

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.4038

Class C:

plasma membrane

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT5G19990

Predicted

Affinity Capture-MS

FSW = 0.3471

Class C:

plasma membrane

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G53750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.4054

Class C:

plasma membrane

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT2G20140

Predicted

Affinity Capture-MS

FSW = 0.5426

Class C:

plasma membrane

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT4G24820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5036

Class C:

plasma membrane

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT1G09100

Predicted

Affinity Capture-MS

FSW = 0.6092

Class C:

plasma membrane

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.0138

Class C:

plasma membrane

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G26300

Predicted

Synthetic Rescue

FSW = 0.0164

Class C:

plasma membrane

GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT1G20200

Predicted

Affinity Capture-MS

FSW = 0.6157

Class C:

plasma membrane

EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT3G51260

Predicted

Affinity Capture-MS

FSW = 0.3581

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300

Predicted

Affinity Capture-MS

FSW = 0.2399

Unknown

PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

interaction prediction

FSW = 0.2861

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G63780

Predicted

Affinity Capture-MS

FSW = 0.0411

Unknown

IMP4
AT1G79750

Predicted

Affinity Capture-MS

FSW = 0.0978

Unknown

ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT1G16190

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.3085

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G58290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4730

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT2G05840

Predicted

Affinity Capture-MS

FSW = 0.0889

Unknown

PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G19006

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5625

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT1G64750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4640

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT5G23540

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4744

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4899

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT4G38630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2416

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5298

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT1G51710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3023

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G29150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3547

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G02080Predicted

Affinity Capture-MS

FSW = 0.0295

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G64520

Predicted

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Synthetic Lethality

interaction prediction

FSW = 0.4635

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT2G03430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4986

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT1G80410

Predicted

Affinity Capture-MS

FSW = 0.0586

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.1141

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT1G30820

Predicted

Affinity Capture-MS

FSW = 0.2401

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT2G17190

Predicted

interaction prediction

FSW = 0.1850

Unknown

UBIQUITIN FAMILY PROTEIN
AT2G32730

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5503

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454