Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G04810 - ( 26S proteasome regulatory subunit putative )
36 Proteins interacs with AT1G04810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.4347
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G45000 | PredictedAffinity Capture-MS | FSW = 0.5209
| Class C:plasma membrane | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT5G52640 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0118
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G20580 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4038
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.3471
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4054
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G20140 | PredictedAffinity Capture-MS | FSW = 0.5426
| Class C:plasma membrane | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5036
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedAffinity Capture-MS | FSW = 0.6092
| Class C:plasma membrane | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0138
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G26300 | PredictedSynthetic Rescue | FSW = 0.0164
| Class C:plasma membrane | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT1G20200 | PredictedAffinity Capture-MS | FSW = 0.6157
| Class C:plasma membrane | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT3G51260 | PredictedAffinity Capture-MS | FSW = 0.3581
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MS | FSW = 0.2399
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | Predictedinteraction prediction | FSW = 0.2861
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G63780 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | IMP4 |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0978
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT1G16190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.3085
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4730
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT2G05840 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5625
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G64750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4640
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT5G23540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4744
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4899
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2416
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5298
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3023
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G29150 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3547
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G02080 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G64520 | PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethalityinteraction prediction | FSW = 0.4635
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G03430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4986
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G80410 | PredictedAffinity Capture-MS | FSW = 0.0586
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.1141
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT1G30820 | PredictedAffinity Capture-MS | FSW = 0.2401
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT2G17190 | Predictedinteraction prediction | FSW = 0.1850
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT2G32730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5503
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454