Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G05190 - ( emb2394 (embryo defective 2394) structural constituent of ribosome )
36 Proteins interacs with AT1G05190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G08670 | Predictedpull down | FSW = 0.0595
| Class C:plastid | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT3G63490 | PredictedAffinity Capture-MS | FSW = 0.2964
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT1G15140 | Predictedpull down | FSW = 0.0473
| Class C:plastid | OXIDOREDUCTASE NAD-BINDING DOMAIN-CONTAINING PROTEIN |
AT2G19870 | Predictedpull down | FSW = 0.0710
| Class C:plastid | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
AT5G40950 | PredictedAffinity Capture-MS | FSW = 0.2881
| Class C:plastid | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G22230 | Predictedpull down | FSW = 0.1350
| Class C:plastid | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
AT1G17220 | Predictedpull down | FSW = 0.0679
| Class C:plastid | FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR |
AT3G03710 | Predictedpull down | FSW = 0.1580
| Class C:plastid | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
AT5G55220 | Predictedpull down | FSW = 0.0473
| Class C:plastid | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
AT4G01310 | PredictedAffinity Capture-MS | FSW = 0.4605
| Class C:plastid | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
ATCG00740 | Predictedpull down | FSW = 0.1520
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
ATCG00830 | Predictedpull down | FSW = 0.1374
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.1827
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT4G37910 | Predictedpull down | FSW = 0.0332
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT1G50510 | Predictedpull down | FSW = 0.0861
| Unknown | INDIGOIDINE SYNTHASE A FAMILY PROTEIN |
AT1G75230 | Predictedpull down | FSW = 0.0817
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT3G17465 | PredictedAffinity Capture-MS | FSW = 0.2012
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31460 | PredictedAffinity Capture-MS | FSW = 0.3404
| Unknown | RIBOSOMAL PROTEIN L28 FAMILY PROTEIN |
AT3G03600 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G41460 | Predictedpull down | FSW = 0.0409
| Unknown | ARP DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE |
AT5G58080 | Predictedpull down | FSW = 0.0229
| Unknown | ARR18 (ARABIDOPSIS RESPONSE REGULATOR 18) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G79500 | Predictedpull down | FSW = 0.0837
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
AT1G02640 | Predictedpull down | FSW = 0.0563
| Unknown | BXL2 (BETA-XYLOSIDASE 2) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G16930 | Predictedpull down | FSW = 0.2227
| Unknown | RIBOSOMAL PROTEIN L27 FAMILY PROTEIN |
AT2G17510 | Predictedpull down | FSW = 0.1036
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT2G20060 | Predictedpull down | FSW = 0.2055
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT3G22310 | Predictedpull down | FSW = 0.1174
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT4G29540 | Predictedpull down | FSW = 0.0578
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT5G08030 | Predictedpull down | FSW = 0.0229
| Unknown | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN |
AT5G23230 | Predictedpull down | FSW = 0.0780
| Unknown | NIC2 (NICOTINAMIDASE 2) CATALYTIC/ NICOTINAMIDASE |
AT5G51140 | Predictedpull down | FSW = 0.1520
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT5G63290 | Predictedpull down | FSW = 0.0493
| Unknown | COPROPORPHYRINOGEN OXIDASE-RELATED |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0074
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G64670 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3228
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT1G07830 | PredictedAffinity Capture-MS | FSW = 0.2012
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
AT1G14620 | PredictedAffinity Capture-MS | FSW = 0.3361
| Unknown | DECOY (DECOY) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454