Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G05785 - ( Got1-like family protein )

41 Proteins interacs with AT1G05785
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.0897

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT1G31780

Predicted

Phenotypic Enhancement

FSW = 0.0761

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT4G04910

Predicted

Phenotypic Enhancement

FSW = 0.0273

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G26590

Predicted

biochemical

FSW = 0.0383

Unknown

MATE EFFLUX FAMILY PROTEIN
AT5G57490

Predicted

Affinity Capture-MS

FSW = 0.0245

Unknown

VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) VOLTAGE-GATED ANION CHANNEL
AT5G65430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0878

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G44610

Predicted

Affinity Capture-MS

FSW = 0.1012

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G47370

Predicted

Affinity Capture-MS

FSW = 0.1662

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT4G28950

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2333

Unknown

ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.0363

Unknown

SEC22 TRANSPORTER
AT1G75170

Predicted

Co-purification

FSW = 0.0083

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0071

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.1756

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT3G08720

Predicted

interologs mapping

FSW = 0.0195

Unknown

S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE
AT2G23460

Predicted

Affinity Capture-MS

FSW = 0.1717

Unknown

XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT3G52580

Predicted

Affinity Capture-MS

FSW = 0.1327

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480

Predicted

Affinity Capture-MS

FSW = 0.1471

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.1459

Unknown

PSF2
AT1G01910

Predicted

Phenotypic Enhancement

FSW = 0.0678

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT1G05660

Predicted

two hybrid

FSW = 0.0434

Unknown

POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G14310

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.4169

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G79210

Predicted

Affinity Capture-MS

FSW = 0.0993

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT2G46070

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.0259

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT3G12180

Predicted

Phenotypic Enhancement

FSW = 0.0976

Unknown

CORNICHON FAMILY PROTEIN
AT4G14240

Predicted

biochemical

FSW = 0.0460

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT4G26550

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0557

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK)
AT5G67380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1618

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.1940

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G79990

Predicted

Phenotypic Enhancement

FSW = 0.0683

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.0668

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G19910

Predicted

Affinity Capture-MS

FSW = 0.0636

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.1593

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT3G23570

Predicted

Affinity Capture-MS

FSW = 0.1728

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G47940

Predicted

Affinity Capture-MS

FSW = 0.1219

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.2029

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.1243

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.0562

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G37830

Predicted

Affinity Capture-MS

FSW = 0.0448

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G57330

Predicted

Affinity Capture-MS

FSW = 0.0107

Unknown

ALDOSE 1-EPIMERASE FAMILY PROTEIN
AT5G01430

Predicted

Phylogenetic profile method

FSW = 0.0096

Unknown

GOT1-LIKE FAMILY PROTEIN
AT3G49420Predicted

Phylogenetic profile method

FSW = 0.0348

Unknown

GOT1-LIKE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454