Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G06080 - ( ADS1 (DELTA 9 DESATURASE 1) oxidoreductase )

28 Proteins interacs with AT1G06080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G07680

Predicted

Affinity Capture-MS

FSW = 0.0108

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT4G01320

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0387

Unknown

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT3G22845

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

EMP24/GP25L/P24 PROTEIN-RELATED
AT5G13710

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0834

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT4G01370

Predicted

biochemical

FSW = 0.0186

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT2G25110

Predicted

interaction prediction

two hybrid

FSW = 0.0290

Unknown

SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)
ATCG00830Predicted

Synthetic Lethality

FSW = 0.0169

Unknown

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT5G52640

Predicted

two hybrid

FSW = 0.0057

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G12480

Predicted

biochemical

FSW = 0.0052

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G67730

Predicted

two hybrid

FSW = 0.0507

Unknown

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT1G01020

Predicted

Phenotypic Suppression

FSW = 0.0249

Unknown

ARV1
AT2G44660

Predicted

interologs mapping

Phenotypic Suppression

FSW = 0.0156

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS
AT3G02580

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0684

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT3G51520

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0306

Unknown

DIACYLGLYCEROL ACYLTRANSFERASE FAMILY
AT4G12460

Predicted

Phenotypic Enhancement

FSW = 0.0402

Unknown

ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT3G06460

Predicted

two hybrid

interaction prediction

FSW = 0.0354

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G55380

Predicted

Phenotypic Enhancement

FSW = 0.0709

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT2G22425

Predicted

Affinity Capture-MS

FSW = 0.0894

Unknown

PEPTIDASE
AT3G46460

Predicted

interologs mapping

FSW = 0.0735

Unknown

UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT2G44065

Predicted

Synthetic Lethality

FSW = 0.0123

Unknown

RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT1G24470

Predicted

two hybrid

FSW = 0.0735

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G15870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3642

Unknown

OXIDOREDUCTASE
AT1G06100

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4070

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT2G31360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4070

Unknown

ADS2 (160DELTA9 ARABIDOPSIS DESATURASE 2) OXIDOREDUCTASE
AT1G06090

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.2097

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G06360

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3459

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G06120

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.4324

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G06350

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.4324

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454