Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G06100 - ( fatty acid desaturase family protein )

8 Proteins interacs with AT1G06100
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G10630

Predicted

two hybrid

FSW = 0.0428

Unknown

ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT3G15870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5471

Unknown

OXIDOREDUCTASE
AT2G31360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6001

Unknown

ADS2 (160DELTA9 ARABIDOPSIS DESATURASE 2) OXIDOREDUCTASE
AT1G06080

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4070

Unknown

ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE
AT1G06090

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.4563

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G06360

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.5240

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G06120

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.6306

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G06350

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.6306

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454