Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G06390 - ( GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) glycogen synthase kinase 3/ kinase )

36 Proteins interacs with AT1G06390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G09840

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3546

Class C:

plasma membrane

ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G18710

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6380

Class C:

plasma membrane

BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE
AT2G19480

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0091

Class C:

plasma membrane

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT4G01370

Predicted

Phylogenetic profile method

FSW = 0.1666

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT4G34430

Predicted

Phenotypic Suppression

FSW = 0.0452

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G33610

Predicted

Phenotypic Suppression

FSW = 0.0644

Unknown

ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT1G24310

Predicted

two hybrid

FSW = 0.0200

Unknown

UNKNOWN PROTEIN
AT5G19310

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.0338

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT1G44120

Predicted

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1674

Unknown

C2 DOMAIN-CONTAINING PROTEIN / ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT1G79000

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0390

Unknown

HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT5G19090

Predicted

Phenotypic Enhancement

FSW = 0.0390

Unknown

HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN
AT1G04160

Predicted

Affinity Capture-MS

FSW = 0.0129

Unknown

XIB (MYOSIN XI B) MOTOR
AT2G26830

Predicted

Affinity Capture-MS

FSW = 0.0216

Unknown

EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G16980

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G02020

Predicted

Affinity Capture-MS

FSW = 0.0566

Unknown

AK3 (ASPARTATE KINASE 3) ASPARTATE KINASE
AT5G50900

Predicted

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.1082

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT1G10040

Predicted

Synthetic Rescue

FSW = 0.0504

Unknown

UNKNOWN PROTEIN
AT2G30980

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5236

Unknown

ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G14640

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6038

Unknown

SK13 (SHAGGY-LIKE KINASE 13) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G61160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3354

Unknown

SHAGGY-RELATED PROTEIN KINASE BETA / ASK-BETA (ASK2)
AT1G07880

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3142

Unknown

ATMPK13 MAP KINASE/ KINASE
AT1G10210

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1255

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G59580

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2039

Unknown

ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT4G00720

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3056

Unknown

ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G19110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1082

Unknown

PROTEIN KINASE PUTATIVE
AT1G57870

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4583

Unknown

ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G43790

Predicted

Phylogenetic profile method

FSW = 0.1689

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G45640

Predicted

Phylogenetic profile method

FSW = 0.4493

Unknown

ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G05840

Predicted

Phylogenetic profile method

FSW = 0.6528

Unknown

ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G46070

Predicted

Phylogenetic profile method

FSW = 0.1881

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT3G59790

Predicted

Phylogenetic profile method

FSW = 0.2294

Unknown

ATMPK10 MAP KINASE/ KINASE
AT2G18170

Predicted

Phylogenetic profile method

FSW = 0.4712

Unknown

ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE
AT5G26751

Predicted

Phylogenetic profile method

FSW = 0.5069

Unknown

ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G36450

Predicted

Phylogenetic profile method

FSW = 0.5520

Unknown

ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE
AT1G34140

Predicted

Gene fusion method

FSW = 0.0750

Unknown

PAB1 (POLY(A) BINDING PROTEIN 1) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G71840

Predicted

Gene fusion method

FSW = 0.0500

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454