Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G06790 - ( RNA polymerase Rpb7 N-terminal domain-containing protein )
67 Proteins interacs with AT1G06790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2568
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT4G19640 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | ARA7 GTP BINDING |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.4033
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0175
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0171
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.3867
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT3G54660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1202
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT1G19660 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G31190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2318
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.2515
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT5G58640 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | SELENOPROTEIN-RELATED |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4722
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1992
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G79450 | PredictedSynthetic Lethality | FSW = 0.0145
| Unknown | ALIS5 (ALA-INTERACTING SUBUNIT 5) |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4356
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2743
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G07950 | PredictedAffinity Capture-MS | FSW = 0.1202
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT1G21700 | PredictedPhenotypic Enhancement | FSW = 0.0099
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4915
| Unknown | UNKNOWN PROTEIN |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.0287
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT1G30810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5116
| Unknown | TRANSCRIPTION FACTOR |
AT1G65470 | PredictedPhenotypic Enhancement | FSW = 0.0038
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT1G72560 | Predictedinteraction predictiontwo hybrid | FSW = 0.0120
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.0123
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT5G18620 | PredictedPhenotypic Enhancement | FSW = 0.0159
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT4G07820 | Predictedtwo hybrid | FSW = 0.0769
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G38960 | PredictedAffinity Capture-MS | FSW = 0.1627
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G73190 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | TIP31 WATER CHANNEL |
AT1G61700 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1282
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT2G29540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0497
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.2061
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G05830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2000
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G10940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2615
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G15780 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | UNKNOWN PROTEIN |
AT1G60620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1248
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4180
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G22690 | Predictedtwo hybridinteraction prediction | FSW = 0.0267
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3030
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G31060 | PredictedAffinity Capture-MS | FSW = 0.3003
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3783
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G20800 | PredictedPhenotypic Enhancement | FSW = 0.0298
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1242
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.2915
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedAffinity Capture-MSCo-purification | FSW = 0.3151
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G54630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2066
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT4G00810 | PredictedAffinity Capture-MS | FSW = 0.2301
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT5G13240 | PredictedSynthetic Rescue | FSW = 0.0973
| Unknown | TRANSCRIPTION REGULATOR |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3683
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0354
| Unknown | BINDING |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0259
| Unknown | ORMDL FAMILY PROTEIN |
AT5G45140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1776
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT5G60040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2034
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
AT1G09020 | PredictedPhenotypic Enhancement | FSW = 0.0282
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G10350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3633
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G54250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1839
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT1G74250 | PredictedAffinity Capture-MS | FSW = 0.3370
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5177
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G06670 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | BINDING |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.3196
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3322
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT4G38630 | PredictedPhenotypic Enhancement | FSW = 0.0043
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G51940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1838
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G59890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2689
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT5G61770 | PredictedPhenotypic Enhancement | FSW = 0.0028
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT2G04630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1315
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G11475 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1221
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454