Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G06790 - ( RNA polymerase Rpb7 N-terminal domain-containing protein )

67 Proteins interacs with AT1G06790
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01280

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2568

Unknown

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT4G19640

Predicted

two hybrid

FSW = 0.0156

Unknown

ARA7 GTP BINDING
AT1G14010

Predicted

Affinity Capture-MS

FSW = 0.4033

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0175

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0171

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT5G26030

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT3G09820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.3867

Unknown

ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT3G54660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1202

Unknown

GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE
AT1G19660

Predicted

Affinity Capture-MS

FSW = 0.0134

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT1G31190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2318

Unknown

IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT1G18870

Predicted

Affinity Capture-MS

FSW = 0.2515

Unknown

ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE
AT5G58640

Predicted

two hybrid

FSW = 0.0098

Unknown

SELENOPROTEIN-RELATED
AT4G08690

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4722

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G04720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1992

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G79450

Predicted

Synthetic Lethality

FSW = 0.0145

Unknown

ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT5G45380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4356

Unknown

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT3G46900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2743

Unknown

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT4G07950

Predicted

Affinity Capture-MS

FSW = 0.1202

Unknown

DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT1G21700

Predicted

Phenotypic Enhancement

FSW = 0.0099

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT5G59960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4915

Unknown

UNKNOWN PROTEIN
AT5G35910

Predicted

Phenotypic Enhancement

FSW = 0.0287

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT1G30810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5116

Unknown

TRANSCRIPTION FACTOR
AT1G65470

Predicted

Phenotypic Enhancement

FSW = 0.0038

Unknown

FAS1 (FASCIATA 1) HISTONE BINDING
AT1G72560

Predicted

interaction prediction

two hybrid

FSW = 0.0120

Unknown

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.0123

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G18620

Predicted

Phenotypic Enhancement

FSW = 0.0159

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT4G07820

Predicted

two hybrid

FSW = 0.0769

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G38960

Predicted

Affinity Capture-MS

FSW = 0.1627

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT1G73190

Predicted

two hybrid

FSW = 0.0143

Unknown

TIP31 WATER CHANNEL
AT1G61700

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1282

Unknown

DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10)
AT2G29540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0497

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G02730

Predicted

Affinity Capture-MS

FSW = 0.2061

Unknown

ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE
AT1G05830

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2000

Unknown

ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G10940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2615

Unknown

SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE
AT1G15780

Predicted

Phenotypic Enhancement

FSW = 0.0270

Unknown

UNKNOWN PROTEIN
AT1G60620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1248

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G20410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4180

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G22690

Predicted

two hybrid

interaction prediction

FSW = 0.0267

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT2G29680

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3030

Unknown

CDC6 (CELL DIVISION CONTROL 6)
AT2G31060

Predicted

Affinity Capture-MS

FSW = 0.3003

Unknown

ELONGATION FACTOR FAMILY PROTEIN
AT3G05760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3783

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G20800

Predicted

Phenotypic Enhancement

FSW = 0.0298

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G22320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1242

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G52590Predicted

Affinity Capture-MS

FSW = 0.2915

Unknown

UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G53880

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.3151

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G54630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2066

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK)
AT4G00810

Predicted

Affinity Capture-MS

FSW = 0.2301

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B)
AT5G13240

Predicted

Synthetic Rescue

FSW = 0.0973

Unknown

TRANSCRIPTION REGULATOR
AT5G16960

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3683

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0354

Unknown

BINDING
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0259

Unknown

ORMDL FAMILY PROTEIN
AT5G45140

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1776

Unknown

NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT5G60040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2034

Unknown

NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING
AT1G09020

Predicted

Phenotypic Enhancement

FSW = 0.0282

Unknown

SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G10350

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3633

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G54250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1839

Unknown

NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G74250

Predicted

Affinity Capture-MS

FSW = 0.3370

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G29940

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5177

Unknown

PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G06670

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

BINDING
AT4G29910

Predicted

Affinity Capture-MS

FSW = 0.3196

Unknown

ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT4G31770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3322

Unknown

CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT4G38630

Predicted

Phenotypic Enhancement

FSW = 0.0043

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G51940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1838

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G59890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2689

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT5G61770

Predicted

Phenotypic Enhancement

FSW = 0.0028

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT2G04630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1315

Unknown

NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G11475

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1221

Unknown

NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454