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AT1G06960 - ( small nuclear ribonucleoprotein U2B putative / spliceosomal protein putative )

101 Proteins interacs with AT1G06960

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G09760	Predicted in vitro Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Reconstituted Complex two hybrid interaction prediction Enriched domain pair Co-expression	FSW = 0.0579	Class C: nucleus	U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770	Predicted Affinity Capture-MS	FSW = 0.0356	Class C: nucleus	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT1G55920	Predicted Phenotypic Enhancement	FSW = 0.0129	Class C: nucleus	ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT5G41370	Predicted interologs mapping interaction prediction	FSW = 0.0203	Class C: nucleus	XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT2G30260	Predicted Phylogenetic profile method Co-expression	FSW = 0.1881	Class C: nucleus	U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G47580	Predicted Phylogenetic profile method Co-expression	FSW = 0.0343	Class C: nucleus	U1A (SPLICEOSOMAL PROTEIN U1A) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G36170	Predicted Affinity Capture-MS	FSW = 0.0544	Class C: nucleus	UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT1G17980	Predicted Affinity Capture-MS	FSW = 0.0038	Class C: nucleus	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT1G04510	Predicted Affinity Capture-MS Co-purification	FSW = 0.0281	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G05120	Predicted interologs mapping two hybrid interaction prediction	FSW = 0.0256	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G24490	Predicted Affinity Capture-MS	FSW = 0.0095	Class C: nucleus	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT4G00540	Predicted interologs mapping interaction prediction	FSW = 0.0098	Class C: nucleus	ATMYB3R2 (MYB DOMAIN PROTEIN 3R2) DNA BINDING / TRANSCRIPTION FACTOR
AT4G30220	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0353	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT5G41360	Predicted two hybrid	FSW = 0.0137	Class C: nucleus	XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT2G17360	Predicted synthetic growth defect	FSW = 0.0328	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G08710	Predicted Synthetic Lethality	FSW = 0.0176	Unknown	ATH9 (THIOREDOXIN H-TYPE 9)
AT5G13450	Predicted Phenotypic Enhancement	FSW = 0.0518	Unknown	ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT1G23730	Predicted two hybrid	FSW = 0.0096	Unknown	BCA3 (BETA CARBONIC ANHYDRASE 4) CARBONATE DEHYDRATASE/ ZINC ION BINDING
AT3G48170	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0997	Unknown	ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G64190	Predicted Synthetic Lethality Affinity Capture-Western	FSW = 0.0784	Unknown	6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT3G11630	Predicted synthetic growth defect	FSW = 0.0190	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT5G15450	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1138	Unknown	CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G59040	Predicted interologs mapping interaction prediction	FSW = 0.0070	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G26160	Predicted Affinity Capture-MS	FSW = 0.0093	Unknown	METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT1G10070	Predicted Synthetic Lethality	FSW = 0.0165	Unknown	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT4G36490	Predicted synthetic growth defect	FSW = 0.0543	Unknown	SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT4G14350	Predicted Affinity Capture-MS	FSW = 0.0648	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G04750	Predicted Reconstituted Complex	FSW = 0.0895	Unknown	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G32670	Predicted Phenotypic Enhancement	FSW = 0.0401	Unknown	ATVAMP725
AT3G47960	Predicted Affinity Capture-MS	FSW = 0.0098	Unknown	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G46900	Predicted Affinity Capture-MS	FSW = 0.0777	Unknown	COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT2G17420	Predicted Synthetic Rescue synthetic growth defect	FSW = 0.0646	Unknown	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE
AT5G47630	Predicted Affinity Capture-MS	FSW = 0.0516	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT1G58180	Predicted interaction prediction	FSW = 0.0208	Unknown	CARBONIC ANHYDRASE FAMILY PROTEIN / CARBONATE DEHYDRATASE FAMILY PROTEIN
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.0042	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G14580	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0123	Unknown	ATPRB1
AT3G13900	Predicted Affinity Capture-MS	FSW = 0.0962	Unknown	ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT5G40820	Predicted interologs mapping two hybrid interaction prediction	FSW = 0.0189	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT4G17190	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1014	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G27070	Predicted Affinity Capture-MS	FSW = 0.0541	Unknown	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT2G31580	Predicted two hybrid two hybrid	FSW = 0.0214	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S TRNAHIS GUANYLYLTRANSFERASE (INTERPROIPR007537) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G323201) HAS 640 BLAST HITS TO 336 PROTEINS IN 155 SPECIES ARCHAE - 65 BACTERIA - 47 METAZOA - 212 FUNGI - 176 PLANTS - 43 VIRUSES - 2 OTHER EUKARYOTES - 95 (SOURCE NCBI BLINK)
AT3G04600	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0344	Unknown	TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN
AT4G26870	Predicted Phenotypic Enhancement Phenotypic Enhancement Co-expression	FSW = 0.0085	Unknown	ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE
AT5G06160	Predicted Phenotypic Suppression Phenotypic Enhancement Phenotypic Enhancement Phenotypic Suppression Co-expression	FSW = 0.0298	Unknown	ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT2G43770	Predicted Affinity Capture-MS	FSW = 0.0173	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G02100	Predicted Affinity Capture-MS	FSW = 0.0424	Unknown	LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G05830	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid	FSW = 0.1040	Unknown	ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G21370	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1419	Unknown	UNKNOWN PROTEIN
AT1G55300	Predicted Phenotypic Enhancement	FSW = 0.0516	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G80500	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0429	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G31900	Predicted Affinity Capture-MS	FSW = 0.0205	Unknown	XIF MOTOR
AT3G11830	Predicted Synthetic Rescue	FSW = 0.0055	Unknown	CHAPERONIN PUTATIVE
AT3G13060	Predicted Affinity Capture-MS	FSW = 0.0292	Unknown	ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK)
AT3G24010	Predicted interologs mapping interologs mapping	FSW = 0.0904	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G25900	Predicted Phenotypic Enhancement	FSW = 0.0430	Unknown	HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G47290	Predicted Phenotypic Enhancement	FSW = 0.1130	Unknown	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT3G53030	Predicted Affinity Capture-Western interologs mapping two hybrid interologs mapping Affinity Capture-Western Synthetic Lethality	FSW = 0.0867	Unknown	SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT3G53880	Predicted Co-purification	FSW = 0.0530	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G00810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0926	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B)
AT4G14000	Predicted two hybrid	FSW = 0.0743	Unknown	UNKNOWN PROTEIN
AT4G21490	Predicted Synthetic Lethality	FSW = 0.1192	Unknown	NDB3 NADH DEHYDROGENASE
AT4G29580	Predicted Phenotypic Enhancement	FSW = 0.0603	Unknown	CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G01770	Predicted Co-crystal Structure Reconstituted Complex Affinity Capture-MS Affinity Capture-Western	FSW = 0.1458	Unknown	RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G06150	Predicted interologs mapping	FSW = 0.0520	Unknown	CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G38890	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0083	Unknown	EXORIBONUCLEASE-RELATED
AT5G49970	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1375	Unknown	ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G64760	Predicted Phenotypic Enhancement	FSW = 0.0337	Unknown	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT1G07820	Predicted Affinity Capture-Western	FSW = 0.0840	Unknown	HISTONE H4
AT1G13950	Predicted Synthetic Lethality	FSW = 0.0290	Unknown	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G26690	Predicted synthetic growth defect	FSW = 0.1261	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G34460	Predicted synthetic growth defect	FSW = 0.0375	Unknown	CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G54560	Predicted Phenotypic Enhancement	FSW = 0.0668	Unknown	XIE MOTOR/ PROTEIN BINDING
AT1G74250	Predicted Affinity Capture-MS	FSW = 0.0871	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G77780	Predicted synthetic growth defect	FSW = 0.0580	Unknown	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT2G19220	Predicted Affinity Capture-Western	FSW = 0.0885	Unknown	UNKNOWN PROTEIN
AT2G34250	Predicted Affinity Capture-MS	FSW = 0.0120	Unknown	PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT3G01100	Predicted Affinity Capture-Western	FSW = 0.0842	Unknown	HYP1 (HYPOTHETICAL PROTEIN 1)
AT3G47610	Predicted Synthetic Lethality	FSW = 0.0856	Unknown	TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G49420	Predicted Synthetic Lethality	FSW = 0.0252	Unknown	GOT1-LIKE FAMILY PROTEIN
AT4G29910	Predicted Affinity Capture-MS	FSW = 0.0866	Unknown	ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT4G31770	Predicted Affinity Capture-MS	FSW = 0.0980	Unknown	CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT4G32350	Predicted two hybrid	FSW = 0.0354	Unknown	UNKNOWN PROTEIN
AT5G17860	Predicted interologs mapping Reconstituted Complex biochemical	FSW = 0.1643	Unknown	CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G47080	Predicted Affinity Capture-Western	FSW = 0.0751	Unknown	CKB1 PROTEIN KINASE REGULATOR
AT5G54960	Predicted Affinity Capture-MS	FSW = 0.0460	Unknown	PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING
AT3G16650	Predicted Affinity Capture-MS	FSW = 0.0284	Unknown	PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT2G39260	Predicted Affinity Capture-MS	FSW = 0.0101	Unknown	RNA BINDING / BINDING / PROTEIN BINDING
AT5G16260	Predicted in vivo Co-expression	FSW = 0.0143	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G13780	Predicted synthetic growth defect	FSW = 0.0311	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G80410	Predicted synthetic growth defect	FSW = 0.0172	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G55255	Predicted synthetic growth defect	FSW = 0.0386	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G14400	Predicted synthetic growth defect	FSW = 0.0158	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G58560	Predicted Synthetic Lethality	FSW = 0.0289	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G15920	Predicted Synthetic Lethality	FSW = 0.0295	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT2G44100	Predicted two hybrid	FSW = 0.0051	Unknown	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR
AT1G03560	Predicted two hybrid	FSW = 0.0355	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G43330	Predicted two hybrid	FSW = 0.0097	Unknown	MYB FAMILY PROTEIN-RELATED
AT4G25120	Predicted two hybrid interaction prediction	FSW = 0.0363	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT1G69380	Predicted two hybrid interaction prediction	FSW = 0.0100	Unknown	UNKNOWN PROTEIN
AT2G17930	Predicted two hybrid interaction prediction	FSW = 0.0045	Unknown	BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G09550	Predicted interaction prediction	FSW = 0.0048	Unknown	RAB GDP-DISSOCIATION INHIBITOR

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT1G06960 - ( small nuclear ribonucleoprotein U2B putative / spliceosomal protein putative )

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