Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G07030 - ( mitochondrial substrate carrier family protein )

15 Proteins interacs with AT1G07030
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G16010

Predicted

interologs mapping

interologs mapping

FSW = 0.0395

Class C:

mitochondrion

MAGNESIUM TRANSPORTER CORA-LIKE FAMILY PROTEIN (MRS2-1)
AT2G30160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0283

Class C:

mitochondrion

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G16720

Predicted

two hybrid

FSW = 0.1701

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15A)
AT3G48750

Predicted

two hybrid

two hybrid

FSW = 0.0209

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0091

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G30230

Predicted

two hybrid

FSW = 0.0902

Unknown

ELONGATION FACTOR 1-BETA / EF-1-BETA
AT4G17390

Predicted

two hybrid

FSW = 0.0218

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G18130

Predicted

Gene fusion method

FSW = 0.0779

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT5G61240

Predicted

Gene fusion method

FSW = 0.2381

Unknown

PROTEIN BINDING
AT2G18110

Predicted

two hybrid

FSW = 0.0933

Unknown

ELONGATION FACTOR 1-BETA PUTATIVE / EF-1-BETA PUTATIVE
AT2G01770

Predicted

interologs mapping

FSW = 0.0525

Unknown

VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT4G03240

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.1184

Unknown

FH (FRATAXIN HOMOLOG)
AT5G62700Predicted

two hybrid

FSW = 0.0261

Unknown

TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G48630

Predicted

Gene fusion method

FSW = 0.2268

Unknown

RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) NUCLEOTIDE BINDING
AT5G48180

Predicted

Gene fusion method

FSW = 0.3850

Unknown

NSP5 (NITRILE SPECIFIER PROTEIN 5)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454