Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07180 - ( NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH dehydrogenase )
61 Proteins interacs with AT1G07180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20800 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0481
| Class C:peroxisomemitochondrion | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT2G29990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0507
| Class C:peroxisomemitochondrion | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0202
| Class C:peroxisomemitochondrion | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT4G28220 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.3548
| Class C:peroxisomemitochondrion | NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE |
AT1G45145 | PredictedPhenotypic Suppression | FSW = 0.0293
| Class C:peroxisome | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0515
| Class C:peroxisome | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G13610 | PredictedAffinity Capture-MS | FSW = 0.0155
| Class C:mitochondrion | UNKNOWN PROTEIN |
AT5G54770 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0878
| Class C:mitochondrion | THI1 PROTEIN HOMODIMERIZATION |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0107
| Class C:mitochondrion | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0017
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G45170 | PredictedCo-purificationCo-purificationCo-purificationCo-purificationtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridCo-purificationco-fractionationCo-fractionationinterologs mapping | FSW = 0.0813
| Unknown | ATATG8E MICROTUBULE BINDING |
AT5G36790 | Predictedinterologs mapping | FSW = 0.0147
| Unknown | PHOSPHOGLYCOLATE PHOSPHATASE PUTATIVE |
AT2G06850 | Predictedinterologs mapping | FSW = 0.0510
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G23740 | PredictedAffinity Capture-MS | FSW = 0.2715
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G04750 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0494
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G04340 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1052
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G79450 | PredictedAffinity Capture-MS | FSW = 0.0728
| Unknown | ALIS5 (ALA-INTERACTING SUBUNIT 5) |
AT4G23700 | PredictedAffinity Capture-MS | FSW = 0.2511
| Unknown | ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT5G47700 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT3G56760 | Predictedtwo hybridsynthetic growth defectSynthetic Lethality | FSW = 0.0285
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT4G33090 | PredictedAffinity Capture-MS | FSW = 0.0618
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT3G53960 | Predictedsynthetic growth defect | FSW = 0.0717
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G29140 | PredictedAffinity Capture-MS | FSW = 0.2368
| Unknown | APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING |
AT4G14350 | PredictedPhenotypic Suppression | FSW = 0.0494
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G03930 | Predictedinterologs mapping | FSW = 0.0076
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G36170 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1063
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G66656 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | AGL91 TRANSCRIPTION FACTOR |
AT5G35160 | PredictedReconstituted Complex | FSW = 0.0963
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G126501) HAS 1053 BLAST HITS TO 1004 PROTEINS IN 163 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 478 FUNGI - 143 PLANTS - 250 VIRUSES - 0 OTHER EUKARYOTES - 182 (SOURCE NCBI BLINK) |
AT1G50060 | PredictedAffinity Capture-MS | FSW = 0.2865
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G47990 | PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.0939
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT3G13900 | PredictedSynthetic Lethality | FSW = 0.0872
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT5G49060 | Predictedtwo hybridAffinity Capture-Westernsynthetic growth defectSynthetic Lethality | FSW = 0.1180
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10090 | PredictedAffinity Capture-Westerninterologs mappingtwo hybrid | FSW = 0.0550
| Unknown | UNKNOWN PROTEIN |
AT1G27040 | PredictedCo-purificationReconstituted Complex | FSW = 0.0307
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G34460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0167
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G66240 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-WesternCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-Westerntwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-MSReconstituted ComplexPhenotypic EnhancementAffinity Capture-WesternCo-purificationco-fractionationCo-fractionationinterologs mappingSynthetic LethalityCo-crystal Structure | FSW = 0.1910
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT1G68310 | PredictedAffinity Capture-MS | FSW = 0.1658
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT1G75380 | PredictedPhenotypic Enhancement | FSW = 0.1093
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT2G15230 | Predictedinterologs mapping | FSW = 0.0706
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31760 | PredictedAffinity Capture-MS | FSW = 0.2074
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | XIF MOTOR |
AT2G46710 | Predictedinterologs mappinginterologs mappingAffinity Capture-Western | FSW = 0.0492
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT3G22290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0759
| Unknown | UNKNOWN PROTEIN |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1299
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT3G62760 | Predictedtwo hybrid | FSW = 0.0051
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.1507
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1540
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G47080 | PredictedSynthetic Lethality | FSW = 0.0407
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G65980 | PredictedCo-purificationCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationSynthetic Lethalitytwo hybridco-fractionationCo-fractionationinterologs mapping | FSW = 0.0888
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
AT5G66610 | PredictedSynthetic Lethality | FSW = 0.0242
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.0671
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G61740 | PredictedAffinity Capture-MS | FSW = 0.0546
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0543
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G01770 | PredictedPhenotypic Suppression | FSW = 0.0832
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G56510 | PredictedAffinity Capture-MS | FSW = 0.2817
| Unknown | APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING |
AT4G21490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1076
| Unknown | NDB3 NADH DEHYDROGENASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454