Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07340 - ( ATSTP2 (SUGAR TRANSPORTER 2) carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sugarhydrogen symporter )
46 Proteins interacs with AT1G07340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | Predictedbiochemical | FSW = 0.0136
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT5G63400 | Predictedbiochemical | FSW = 0.0155
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0151
| Unknown | UNKNOWN PROTEIN |
AT3G26590 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0369
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G45960 | PredictedAffinity Capture-MS | FSW = 0.0332
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0644
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0546
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT2G44350 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT3G19170 | Predictedbiochemical | FSW = 0.0465
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT1G16880 | Predictedtwo hybrid | FSW = 0.0277
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT3G17430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0421
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT4G35950 | Predictedinterologs mapping | FSW = 0.0405
| Unknown | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
AT4G21680 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0291
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.0289
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT5G61000 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT2G15430 | PredictedAffinity Capture-Western | FSW = 0.0342
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G04870 | Predictedtwo hybrid | FSW = 0.0433
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
AT1G01020 | PredictedCo-purification | FSW = 0.0340
| Unknown | ARV1 |
AT5G28060 | PredictedPhenotypic Enhancement | FSW = 0.0533
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G02630 | Predictedco-fractionationCo-fractionation | FSW = 0.0570
| Unknown | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8) |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G05660 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G27320 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G59730 | PredictedAffinity Capture-Western | FSW = 0.0096
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT2G01070 | PredictedAffinity Capture-Western | FSW = 0.0687
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT2G19160 | PredictedAffinity Capture-MStwo hybridsynthetic growth defectAffinity Capture-MSAffinity Capture-Western | FSW = 0.1790
| Unknown | UNKNOWN PROTEIN |
AT3G06470 | Predictedbiochemical | FSW = 0.0439
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT4G27960 | Predictedinterologs mapping | FSW = 0.0126
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT4G36050 | PredictedPhenotypic Enhancement | FSW = 0.0153
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G37660 | PredictedAffinity Capture-MS | FSW = 0.1235
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G39400 | Predictedinterologs mappinginterologs mapping | FSW = 0.0549
| Unknown | PTEN1 PHOSPHATASE |
AT5G54800 | Predictedinterologs mapping | FSW = 0.1296
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G27840 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34460 | PredictedPhenotypic Enhancement | FSW = 0.0326
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G60940 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | SNRK210 (SNF1-RELATED PROTEIN KINASE 210) KINASE |
AT1G76920 | PredictedPhenotypic Suppression | FSW = 0.0511
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT5G01670 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT5G67100 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT1G60620 | Predictedtwo hybrid | FSW = 0.0035
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G60870 | PredictedGene fusion method | FSW = 0.0267
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT4G26050 | PredictedGene fusion method | FSW = 0.0600
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454