AtPIN will be upgraded. Please send your suggestions here

AT1G07470 - ( transcription factor IIA large subunit putative / TFIIA large subunit putative )

33 Proteins interacs with AT1G07470

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G20290	Predicted two hybrid	FSW = 0.0199	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT4G12610	Predicted in vitro	FSW = 0.1515	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT3G05560	Predicted two hybrid	FSW = 0.0101	Class C: nucleus	60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT3G10330	Predicted Co-crystal Structure interaction prediction	FSW = 0.0824	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT2G01430	Predicted two hybrid	FSW = 0.0275	Class C: nucleus	ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) TRANSCRIPTION FACTOR
AT5G19310	Predicted interologs mapping	FSW = 0.0262	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT4G20340	Predicted in vitro	FSW = 0.1636	Class C: nucleus	RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT3G13445	Predicted Reconstituted Complex Co-crystal Structure Co-crystal Structure Reconstituted Complex Reconstituted Complex Reconstituted Complex interologs mapping interologs mapping Reconstituted Complex Reconstituted Complex Reconstituted Complex Co-crystal Structure Reconstituted Complex Reconstituted Complex Co-crystal Structure interologs mapping interologs mapping interaction prediction Enriched domain pair	FSW = 0.0563	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G54280	Predicted Synthetic Lethality interaction prediction	FSW = 0.0692	Class C: nucleus	RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G10710	Predicted interologs mapping	FSW = 0.0333	Class C: nucleus	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670	Predicted interologs mapping	FSW = 0.0590	Class C: nucleus	GTC2
AT4G24440	Predicted interaction prediction two hybrid two hybrid Synthetic Lethality Reconstituted Complex Co-purification Co-purification Co-crystal Structure Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS in vitro in vitro in vitro in vivo interologs mapping Enriched domain pair	FSW = 0.3785	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S)
AT2G41630	Predicted Co-crystal Structure	FSW = 0.0752	Class C: nucleus	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G55520	Predicted Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex interologs mapping interologs mapping Co-crystal Structure Co-crystal Structure Co-crystal Structure Co-crystal Structure interologs mapping Reconstituted Complex Enriched domain pair	FSW = 0.1179	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT5G67450	Predicted two hybrid	FSW = 0.0256	Class C: nucleus	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) DNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR/ ZINC ION BINDING
AT1G07480	Predicted Phylogenetic profile method	FSW = 0.2650	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT / TFIIA LARGE SUBUNIT (TFIIA-L)
AT1G02680	Predicted two hybrid	FSW = 0.0469	Class C: nucleus	TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT3G06010	Predicted interologs mapping	FSW = 0.0546	Class C: nucleus	ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G62870	Predicted synthetic growth defect	FSW = 0.0013	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G28390	Predicted interologs mapping	FSW = 0.0143	Unknown	AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING
AT4G00520	Predicted synthetic growth defect	FSW = 0.0583	Unknown	ACYL-COA THIOESTERASE FAMILY PROTEIN
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0290	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G02560	Predicted two hybrid	FSW = 0.0143	Unknown	40S RIBOSOMAL PROTEIN S7 (RPS7B)
AT3G54820	Predicted synthetic growth defect	FSW = 0.0534	Unknown	PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT1G32750	Predicted in vitro in vivo interologs mapping	FSW = 0.0983	Unknown	HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT4G20330	Predicted in vitro in vitro	FSW = 0.1524	Unknown	TRANSCRIPTION INITIATION FACTOR-RELATED
AT1G20693	Predicted synthetic growth defect	FSW = 0.0085	Unknown	HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT4G25120	Predicted two hybrid	FSW = 0.0194	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT1G80460	Predicted synthetic growth defect	FSW = 0.0411	Unknown	NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE
AT1G36240	Predicted two hybrid	FSW = 0.0111	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT5G59160	Predicted two hybrid	FSW = 0.0324	Unknown	TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G14400	Predicted two hybrid	FSW = 0.0118	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT2G02760	Predicted interaction prediction	FSW = 0.0109	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G07470 - ( transcription factor IIA large subunit putative / TFIIA large subunit putative )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Downloads

Fasta sequences:

Quick help

FSW

C3

PEP

How to cite