Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07510 - ( ftsh10 (FtsH protease 10) ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nucleotide binding / zinc ion binding )
23 Proteins interacs with AT1G07510| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G03860
   | ExperimentalAffinity Capture-MS | FSW = 0.2975
| Class A:unclearplastidmitochondrionClass B:vacuoleClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | ATPHB2 (PROHIBITIN 2) |
| AT2G29080
| ExperimentalAffinity Capture-Western | FSW = 0.4808
| Class A:unclearplastidmitochondrionClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
| AT5G40770
| ExperimentalAffinity Capture-MS | FSW = 0.2749
| Class A:unclearmitochondrionClass B:vacuoleplastidplasma membranenucleuscytosolClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | ATPHB3 (PROHIBITIN 3) |
| AT4G28510
| ExperimentalAffinity Capture-MS | FSW = 0.2824
| Class A:unclearmitochondrionClass B:vacuoleplastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | ATPHB1 (PROHIBITIN 1) |
| AT2G20530
| ExperimentalAffinity Capture-MS | FSW = 0.2824
| Class A:mitochondrionClass B:vacuoleunclearplastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | ATPHB6 (PROHIBITIN 6) |
| AT2G26140
| PredictedSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.1916
| Class C:unclear | FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE |
| AT3G27280
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2087
| Class C:plastidmitochondrion | ATPHB4 (PROHIBITIN 4) |
| AT1G48030
| PredictedAffinity Capture-MS | FSW = 0.0580
| Class C:plastidmitochondrion | MTLPD1 (MITOCHONDRIAL LIPOAMIDE DEHYDROGENASE 1) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE |
| AT3G10050
| PredictedPhenotypic Suppression | FSW = 0.0544
| Class C:plastid | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
| AT3G05780
| Predictedinterologs mappingEnriched domain pairCo-expression | FSW = 0.2028
| Class C:mitochondrion | LON3 (LON PROTEASE 3) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
| AT5G26860
| Predictedinterologs mapping | FSW = 0.0960
| Class C:mitochondrion | LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE |
| AT2G19670
| Predictedtwo hybrid | FSW = 0.0385
| Unknown | PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE |
| AT2G46470
| Predictedinterologs mapping | FSW = 0.1039
| Unknown | OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) |
| AT1G64520
| PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
| AT1G73570
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0181
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
| AT2G17280
| PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
| AT2G43790
| PredictedSynthetic Lethality | FSW = 0.0078
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
| AT1G78770
| PredictedSynthetic Lethality | FSW = 0.0034
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
| AT1G31660
| PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT5G51740
| PredictedPhenotypic Enhancement | FSW = 0.0664
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
| AT5G13780
| Predictedsynthetic growth defect | FSW = 0.0435
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT1G80410
| Predictedsynthetic growth defect | FSW = 0.0473
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0220
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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