Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07830 - ( ribosomal protein L29 family protein )
25 Proteins interacs with AT1G07830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G65540 | PredictedAffinity Capture-MS | FSW = 0.2151
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G63490 | PredictedAffinity Capture-MS | FSW = 0.2390
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT3G58610 | Predictedsynthetic growth defect | FSW = 0.0259
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT5G40950 | PredictedAffinity Capture-MS | FSW = 0.5629
| Unknown | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G64190 | PredictedSynthetic Lethality | FSW = 0.0089
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT4G01310 | PredictedAffinity Capture-MS | FSW = 0.3843
| Unknown | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT1G05190 | PredictedAffinity Capture-MS | FSW = 0.2012
| Unknown | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G78630 | PredictedAffinity Capture-MS | FSW = 0.1869
| Unknown | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
ATCG00790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3225
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
AT1G21700 | Predictedsynthetic growth defect | FSW = 0.0156
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G50670 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0094
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G17465 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4900
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31460 | PredictedAffinity Capture-MS | FSW = 0.5614
| Unknown | RIBOSOMAL PROTEIN L28 FAMILY PROTEIN |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT1G60170 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0435
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT3G01090 | Predictedbiochemical | FSW = 0.0049
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT4G35490 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1634
| Unknown | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G64650 | PredictedAffinity Capture-MS | FSW = 0.2441
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
AT5G64670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2549
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT5G66630 | Predictedsynthetic growth defect | FSW = 0.0357
| Unknown | DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING |
AT1G14620 | PredictedAffinity Capture-MS | FSW = 0.5417
| Unknown | DECOY (DECOY) |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT2G28820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2353
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454