Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07880 - ( ATMPK13 MAP kinase/ kinase )
56 Proteins interacs with AT1G07880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G29810 | Experimentalprotein kinase assay | FSW = 0.1439
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT5G56580 | Experimental | FSW = 0.0712
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT4G36750 | Predictedtwo hybrid | FSW = 0.0557
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G26030 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G07100 | Predictedtwo hybrid | FSW = 0.0558
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT4G01370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1597
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT3G20550 | PredictedPhenotypic Enhancement | FSW = 0.0275
| Unknown | DDL (DAWDLE) |
AT3G06530 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinterologs mapping | FSW = 0.0040
| Unknown | BINDING |
AT1G50310 | PredictedPhenotypic Suppression | FSW = 0.0033
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G06390 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3142
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT4G18710 | PredictedPhylogenetic profile method | FSW = 0.3507
| Unknown | BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G18510 | PredictedGene fusion method | FSW = 0.0113
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G18040 | PredictedPhylogenetic profile method | FSW = 0.0890
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G76300 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT1G21190 | Predictedtwo hybrid | FSW = 0.0528
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G73690 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0188
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G70190 | Predictedtwo hybrid | FSW = 0.0957
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT4G10040 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0212
| Unknown | ATPRB1 |
AT4G33730 | PredictedPhenotypic Suppression | FSW = 0.0326
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G15900 | Predictedtwo hybrid | FSW = 0.0598
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G16360 | PredictedAffinity Capture-Western | FSW = 0.0214
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G54560 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G68390 | Predictedtwo hybrid | FSW = 0.0672
| Unknown | UNKNOWN PROTEIN |
AT1G71530 | Predictedtwo hybrid | FSW = 0.1271
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G19160 | Predictedtwo hybrid | FSW = 0.0477
| Unknown | UNKNOWN PROTEIN |
AT2G46650 | Predictedtwo hybrid | FSW = 0.1327
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT3G04710 | Predictedinterologs mapping | FSW = 0.0080
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G61210 | Predictedtwo hybrid | FSW = 0.0901
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G30820 | Predictedtwo hybrid | FSW = 0.0928
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G19090 | Predictedtwo hybrid | FSW = 0.1091
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0189
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G38110 | Predictedtwo hybrid | FSW = 0.1167
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT1G10350 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G33040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0115
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT2G16230 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G27170 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT3G55020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0552
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0025
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G36450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4339
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT2G43790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1662
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT1G01560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0604
| Unknown | ATMPK11 MAP KINASE/ KINASE |
AT2G46070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2142
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT1G10210 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1532
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G59580 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1924
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT3G45640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3840
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G18170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4019
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT3G59790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2232
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT5G14640 | PredictedPhylogenetic profile method | FSW = 0.3330
| Unknown | SK13 (SHAGGY-LIKE KINASE 13) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G05840 | PredictedPhylogenetic profile method | FSW = 0.3597
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26751 | PredictedPhylogenetic profile method | FSW = 0.2790
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G30980 | PredictedPhylogenetic profile method | FSW = 0.2414
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454