Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08560 - ( SYP111 (SYNTAXIN OF PLANTS 111) SNAP receptor )
22 Proteins interacs with AT1G08560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G12360 | Experimentalpull downin vitro | FSW = 0.1210
| Class A:plasma membraneClass B:vacuolegolgiendosomecell plateClass D:cytosol (p = 0.67) | KEU (KEULE) PROTEIN TRANSPORTER |
AT5G61210 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0912
| Class A:plasma membraneClass B:plastidgolgiendosomecytosolcell plate | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING |
AT2G35190 | Experimentalaffinity technologyAffinity Capture-Westernco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.0334
| Class A:plasma membraneClass B:golgiendosomecell plateClass D:unclear (p = 0.09) | NPSN11 (NOVEL PLANT SNARE 11) SNAP RECEPTOR/ PROTEIN TRANSPORTER |
AT5G07880 | Experimentaltwo hybrid | FSW = 0.2963
| Class B:plasma membranegolgiendosomecytosolcell plate | SNAP29 SNAP RECEPTOR |
AT1G13890 | Experimentaltwo hybrid | FSW = 0.2747
| Class B:plasma membranegolgiendosomecytosolcell plate | SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) SNAP RECEPTOR |
AT5G23630 | Predictedinterologs mapping | FSW = 0.0473
| Class C:plasma membrane | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11250 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0271
| Class C:plasma membrane | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT1G20090 | Predictedinterologs mapping | FSW = 0.0349
| Class C:plasma membrane | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT1G13210 | Predictedinterologs mapping | FSW = 0.0687
| Class C:plasma membrane | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT1G04750 | PredictedAffinity Capture-WesternAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.0179
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G03330 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1978
| Class C:plasma membrane | SYP123 (SYNTAXIN OF PLANTS 123) SNAP RECEPTOR |
AT4G01320 | Predictedinterologs mapping | FSW = 0.0316
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT1G02010 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic Rescuetwo hybridEnriched domain pair | FSW = 0.1379
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT1G54090 | Predictedinterologs mapping | FSW = 0.1177
| Unknown | ATEXO70D2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2) PROTEIN BINDING |
AT3G56640 | Predictedinterologs mapping | FSW = 0.0598
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT3G06460 | Predictedinterologs mapping | FSW = 0.0591
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT2G34770 | Predictedinterologs mapping | FSW = 0.0392
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT1G57600 | Predictedinterologs mapping | FSW = 0.0730
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G24470 | Predictedinterologs mapping | FSW = 0.0439
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G14290 | Predictedinterologs mapping | FSW = 0.1552
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G13170 | Predictedinterologs mapping | FSW = 0.0803
| Unknown | ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) OXYSTEROL BINDING |
AT5G45900 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454