Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08680 - ( ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4) ARF GTPase activator/ DNA binding / zinc ion binding )

9 Proteins interacs with AT1G08680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G20290

Predicted

two hybrid

FSW = 0.0106

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G20760

Predicted

two hybrid

in vivo

in vitro

FSW = 0.0185

Class C:

plasma membrane

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G21630

Predicted

two hybrid

in vivo

in vitro

in vivo

two hybrid

FSW = 0.0606

Class C:

plasma membrane

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G55770

Predicted

two hybrid

FSW = 0.0635

Unknown

LIM DOMAIN-CONTAINING PROTEIN
AT5G17020

Predicted

in vitro

two hybrid

FSW = 0.0814

Unknown

XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR
AT3G10090Predicted

two hybrid

FSW = 0.0667

Unknown

40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT5G05180

Predicted

two hybrid

FSW = 0.0556

Unknown

UNKNOWN PROTEIN
AT3G57490

Predicted

two hybrid

FSW = 0.0702

Unknown

40S RIBOSOMAL PROTEIN S2 (RPS2D)
AT3G03110

Predicted

in vitro

two hybrid

FSW = 0.0355

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454