Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08830 - ( CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) superoxide dismutase )
36 Proteins interacs with AT1G08830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G14990 | Experimentalprotein complementation assay | FSW = 0.0224
| Unknown | 4-METHYL-5(B-HYDROXYETHYL)-THIAZOLE MONOPHOSPHATE BIOSYNTHESIS PROTEIN PUTATIVE |
AT5G18100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1500
| Unknown | CSD3 (COPPER/ZINC SUPEROXIDE DISMUTASE 3) SUPEROXIDE DISMUTASE |
AT1G12520 | Predictedtwo hybridAffinity Capture-MSCo-crystal StructureReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.2277
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT2G45290 | Predictedinterologs mapping | FSW = 0.0539
| Unknown | TRANSKETOLASE PUTATIVE |
AT1G66410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0021
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.1258
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G22750 | PredictedSynthetic Lethality | FSW = 0.3167
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G19210 | PredictedSynthetic Lethality | FSW = 0.2142
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G01020 | PredictedSynthetic Rescue | FSW = 0.0743
| Unknown | ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE |
AT5G65720 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0391
| Unknown | NFS1 ATP BINDING / CYSTEINE DESULFURASE/ TRANSAMINASE |
AT3G10920 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0087
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G10130 | PredictedSynthetic RescuePhenotypic EnhancementSynthetic Rescue | FSW = 0.0998
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.1394
| Unknown | ATEB1A MICROTUBULE BINDING |
AT2G31970 | PredictedSynthetic Lethality | FSW = 0.1722
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G20850 | PredictedSynthetic Lethality | FSW = 0.1194
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G57450 | PredictedSynthetic Lethality | FSW = 0.2171
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G54260 | PredictedSynthetic Lethality | FSW = 0.1647
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G09080 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0265
| Unknown | BIP3 ATP BINDING |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT3G25230 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G17130 | PredictedAffinity Capture-MS | FSW = 0.0084
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT4G39830 | PredictedPhenotypic Enhancement | FSW = 0.0114
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT3G02470 | PredictedPhenotypic Suppression | FSW = 0.0250
| Unknown | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) ADENOSYLMETHIONINE DECARBOXYLASE |
AT4G30870 | Predictedsynthetic growth defect | FSW = 0.1470
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.1766
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT3G42660 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2038
| Unknown | NUCLEOTIDE BINDING |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.2351
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1855
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1691
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G26680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1517
| Unknown | ENDONUCLEASE PUTATIVE |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.0956
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT1G10930 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1558
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G55255 | PredictedSynthetic Lethality | FSW = 0.0908
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.1372
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G06410 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0474
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454