Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09020 - ( SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) protein kinase activator )

62 Proteins interacs with AT1G09020
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G35580

Experimental

FSW = 0.0157

Unknown

CINV1 (CYTOSOLIC INVERTASE 1) BETA-FRUCTOFURANOSIDASE
AT5G55280

Experimental

FSW = 0.0088

Unknown

FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT3G29160

Experimental

two hybrid

two hybrid

two hybrid

Reconstituted Complex

FSW = 0.0774

Unknown

AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11) PROTEIN BINDING / PROTEIN KINASE
AT3G01090

Experimental

two hybrid

two hybrid

Reconstituted Complex

two hybrid

Reconstituted Complex

in vitro

FSW = 0.1663

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT5G21170

Experimental

two hybrid

Reconstituted Complex

in vitro

FSW = 0.0833

Unknown

5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT4G16360

Experimental

two hybrid

Reconstituted Complex

in vitro

FSW = 0.0656

Unknown

AMP-ACTIVATED PROTEIN KINASE
AT2G28060

Experimental

FSW = 0.0164

Unknown

PROTEIN KINASE-RELATED
AT1G75010

Experimental

FSW = 0.0410

Unknown

ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)
AT1G73500

Experimental

FSW = 0.0166

Unknown

MKK9 (MAP KINASE KINASE 9) MAP KINASE KINASE/ KINASE/ PROTEIN KINASE ACTIVATOR
AT3G23100

Experimental

two hybrid

FSW = 0.0352

Unknown

XRCC4 PROTEIN C-TERMINUS BINDING
AT3G55840

Experimental

two hybrid

Reconstituted Complex

protein complementation assay

split-reporter assay

in vitro

FSW = 0.0144

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 10 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HS1PRO-1 C-TERMINAL (INTERPROIPR009743) HS1PRO-1 N-TERMINAL (INTERPROIPR009869) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) (TAIRAT2G400001) HAS 43 BLAST HITS TO 43 PROTEINS IN 12 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 43 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK)
AT2G40000

Experimental

two hybrid

Reconstituted Complex

protein complementation assay

split-reporter assay

in vitro

FSW = 0.0152

Unknown

HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)
YDR477WExperimental

two hybrid

FSW = 0.0515

Unknown

HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)
AT2G44610

Predicted

interaction prediction

FSW = 0.0092

Unknown

RAB6A GTP BINDING / PROTEIN BINDING
AT1G76490

Predicted

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.0103

Unknown

HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE
AT3G02520

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0479

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G73820

Predicted

Phenotypic Enhancement

FSW = 0.0116

Unknown

SSU72-LIKE FAMILY PROTEIN
AT2G45300

Predicted

Phenotypic Enhancement

FSW = 0.0183

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT3G29320

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0700

Unknown

GLUCAN PHOSPHORYLASE PUTATIVE
AT1G35160

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0394

Unknown

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0178

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G21010

Predicted

Phenotypic Enhancement

FSW = 0.0258

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT3G57660

Predicted

Phenotypic Enhancement

FSW = 0.0313

Unknown

NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT3G13445

Predicted

Synthetic Rescue

FSW = 0.0099

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G72050

Predicted

Phenotypic Enhancement

FSW = 0.0152

Unknown

TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G55520

Predicted

Synthetic Rescue

FSW = 0.0241

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G55750

Predicted

Phenotypic Enhancement

FSW = 0.0162

Unknown

TRANSCRIPTION FACTOR-RELATED
AT4G18040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0047

Unknown

EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G23250

Predicted

Affinity Capture-MS

FSW = 0.0345

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT5G57300

Predicted

interaction prediction

two hybrid

FSW = 0.0155

Unknown

UBIE/COQ5 METHYLTRANSFERASE FAMILY PROTEIN
AT5G08300

Predicted

Affinity Capture-MS

FSW = 0.0317

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0170

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G67490

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0408

Unknown

GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE
AT1G06790

Predicted

Phenotypic Enhancement

FSW = 0.0282

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G08780

Predicted

Phenotypic Suppression

FSW = 0.0454

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.0124

Unknown

NUCLEOTIDE BINDING
AT1G49980

Predicted

Affinity Capture-MS

FSW = 0.1002

Unknown

DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.0563

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G60620

Predicted

Phenotypic Enhancement

FSW = 0.0213

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G78580

Predicted

Synthetic Rescue

FSW = 0.0289

Unknown

ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G18520

Predicted

Phenotypic Suppression

FSW = 0.0475

Unknown

HDA15 HISTONE DEACETYLASE
AT3G26020

Predicted

Phenotypic Suppression

FSW = 0.0180

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G49650

Predicted

two hybrid

FSW = 0.0098

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT5G10260

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0522

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G19680

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0165

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT5G41880

Predicted

Phenotypic Suppression

FSW = 0.0337

Unknown

POLA3 DNA PRIMASE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0577

Unknown

ORMDL FAMILY PROTEIN
AT5G51940

Predicted

Phenotypic Enhancement

FSW = 0.0693

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G55310

Predicted

Phenotypic Enhancement

FSW = 0.0135

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G59140

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0329

Unknown

SKP1 FAMILY PROTEIN
AT5G60550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0464

Unknown

GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE
AT5G67320

Predicted

Phenotypic Enhancement

FSW = 0.0364

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT5G44740

Predicted

Affinity Capture-MS

FSW = 0.0249

Unknown

POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE
AT3G45240

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0264

Unknown

GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G19420

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0222

Unknown

ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE
AT1G29550

Predicted

Affinity Capture-MS

FSW = 0.0065

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.0061

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G24320

Predicted

Synthetic Lethality

FSW = 0.0202

Unknown

ALPHA-GLUCOSIDASE PUTATIVE
AT1G15780

Predicted

Synthetic Rescue

FSW = 0.0985

Unknown

UNKNOWN PROTEIN
AT1G16980

Predicted

Synthetic Rescue

FSW = 0.0152

Unknown

ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G67380

Predicted

interaction prediction

FSW = 0.0035

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT2G32850

Predicted

interaction prediction

FSW = 0.0237

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454