Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09060 - ( transcription factor jumonji (jmjC) domain-containing protein )

19 Proteins interacs with AT1G09060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G54840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

FSW = 0.1140

Class C:

nucleus

SGP1 GTP BINDING
AT4G17730

Predicted

Affinity Capture-MS

FSW = 0.0383

Unknown

SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR
AT4G01840

Predicted

Affinity Capture-MS

FSW = 0.0505

Unknown

KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT2G39290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1593

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT2G29690

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

FSW = 0.4764

Unknown

ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE
AT2G14120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1643

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT5G23900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1330

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT3G47960

Predicted

Affinity Capture-MS

FSW = 0.0741

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G37790

Predicted

Affinity Capture-MS

FSW = 0.0290

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G45280

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.5143

Unknown

SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0370

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT2G20280

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4615

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G38600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4706

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT3G59790

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2116

Unknown

ATMPK10 MAP KINASE/ KINASE
AT5G66360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.4615

Unknown

RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0800

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G79910

Predicted

Affinity Capture-MS

FSW = 0.0803

Unknown

UNKNOWN PROTEIN
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT5G13150

Predicted

Affinity Capture-MS

FSW = 0.0667

Unknown

ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454