Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09100 - ( RPT5B (26S proteasome AAA-ATPase subunit RPT5B) ATPase/ calmodulin binding )
37 Proteins interacs with AT1G09100| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G29130
   | ExperimentalAffinity Capture-MStwo hybridAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0133
| Class B:vacuoleunclearplasma membranemitochondrionClass D:cytosol (p = 0.67) | HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G22630
| PredictedAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.3073
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G45000
| Predictedtwo hybridtwo hybridGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6886
| Class C:plasma membrane | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
| AT1G04810
| PredictedAffinity Capture-MS | FSW = 0.6092
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT2G20580
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3130
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT5G19990
| PredictedAffinity Capture-MSAffinity Capture-WesternPhylogenetic profile method | FSW = 0.3586
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT1G53750
| PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.4184
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT2G20140
| PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.6213
| Class C:plasma membrane | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
| AT4G24820
| PredictedAffinity Capture-MS | FSW = 0.5487
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
| AT3G05530
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7142
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
| AT1G55520
| PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT1G16470
| PredictedAffinity Capture-Western | FSW = 0.1733
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G58290
| Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-MSco-fractionationCo-fractionationCo-purificationtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.4875
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
| AT1G16190
| PredictedAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.3031
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT1G64750
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4302
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
| AT5G23540
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.4669
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT5G09900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4129
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
| AT4G38630
| PredictedAffinity Capture-MS | FSW = 0.2057
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT4G19006
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5281
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT3G11270
| PredictedAffinity Capture-MS | FSW = 0.4971
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
| AT2G03430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4901
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT1G51710
| PredictedAffinity Capture-MS | FSW = 0.2654
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT1G29150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3307
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT1G80410
| PredictedAffinity Capture-MS | FSW = 0.0574
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT5G19820
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0154
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G17270
| PredictedAffinity Capture-MS | FSW = 0.0269
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
| AT1G64520
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4561
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
| AT1G30820
| PredictedAffinity Capture-MS | FSW = 0.1723
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
| AT2G17190
| PredictedAffinity Capture-Western | FSW = 0.2102
| Unknown | UBIQUITIN FAMILY PROTEIN |
| AT5G57950
| Predictedtwo hybrid | FSW = 0.1613
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT4G21660
| Predictedtwo hybrid | FSW = 0.0157
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT3G55070
| Predictedtwo hybrid | FSW = 0.0488
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK) |
| AT3G03960
| Predictedtwo hybrid | FSW = 0.0274
| Unknown | CHAPERONIN PUTATIVE |
| AT4G29040
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5177
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
| AT5G43010
| PredictedPhylogenetic profile method | FSW = 0.5436
| Unknown | RPT4A ATPASE |
| AT5G20000
| PredictedPhylogenetic profile method | FSW = 0.2259
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
| AT1G53780
| PredictedPhylogenetic profile method | FSW = 0.3114
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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