Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09140 - ( SF2/ASF-like splicing modulator (SRP30) )

11 Proteins interacs with AT1G09140
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09440

Experimental

pull down

FSW = 0.0260

Class A:

nucleus

Class B:

vacuole

plasma membrane

Class D:

cytosol (p = 0.67)

 HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT1G55310

Experimental

FSW = 0.4045

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR33 RNA BINDING / PROTEIN BINDING
AT5G18810

Experimental

Reconstituted Complex

in vitro

FSW = 0.6001

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G55460

Experimental

Reconstituted Complex

in vitro

FSW = 0.5818

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G13570

Experimental

Reconstituted Complex

in vitro

FSW = 0.5074

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G43370

Experimental

Reconstituted Complex

FSW = 0.4126

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT3G63400

Experimental

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confocal microscopy

FSW = 0.3036

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT1G53720

Experimental

confocal microscopy

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Reconstituted Complex

in vitro

FSW = 0.2286

Unknown

 CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G46090

Experimental

FSW = 0.0229

Unknown

 ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G30825

Experimental

pull down

FSW = 0.0356

Unknown

 DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE
AT5G35410

Experimental

pull down

FSW = 0.0290

Unknown

 SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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