Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09180 - ( ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP binding )
17 Proteins interacs with AT1G09180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G55200 | Predictedinterologs mapping | FSW = 0.0343
| Class C:plastid | SPLICING FACTOR PUTATIVE |
AT2G01470 | Predictedinterologs mappinginterologs mappinginterologs mappinginterologs mappingbiochemicalinterologs mapping | FSW = 0.0529
| Unknown | STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING |
AT3G22630 | Predictedinterologs mapping | FSW = 0.0199
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G11890 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.0845
| Unknown | SEC22 TRANSPORTER |
AT4G02080 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3636
| Unknown | ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2) GTP BINDING |
AT1G56330 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4464
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | SGP2 GTP BINDING |
AT1G71270 | Predictedtwo hybrid | FSW = 0.0272
| Unknown | POK (POKY POLLEN TUBE) |
AT3G24350 | PredictedAffinity Capture-Western | FSW = 0.1727
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT1G18260 | Predictedinterologs mapping | FSW = 0.0686
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G22200 | PredictedAffinity Capture-Western | FSW = 0.1499
| Unknown | UNKNOWN PROTEIN |
AT1G09580 | PredictedAffinity Capture-Western | FSW = 0.1364
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G05520 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionationCo-purificationinterologs mappingReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.2178
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT3G44340 | PredictedReconstituted ComplexReconstituted ComplexCo-purificationReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.1935
| Unknown | CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G56450 | Predictedinterologs mapping | FSW = 0.0661
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G12340 | PredictedReconstituted Complex | FSW = 0.1060
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT3G62560 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3636
| Unknown | GTP-BINDING PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454