Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09270 - ( IMPA-4 (IMPORTIN ALPHA ISOFORM 4) binding / protein transporter )

85 Proteins interacs with AT1G09270
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33120

Predicted

Affinity Capture-MS

FSW = 0.0587

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT3G47520

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.0614

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.0218

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT2G05630

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

AUTOPHAGY 8D (APG8D)
AT3G23340

Predicted

Affinity Capture-MS

FSW = 0.0091

Unknown

CKL10 (CASEIN KINASE I-LIKE 10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G09660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0951

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT3G63490

Predicted

Affinity Capture-MS

FSW = 0.0057

Unknown

RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT4G26970

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT2G25140

Predicted

Affinity Capture-MS

FSW = 0.0801

Unknown

CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G10070

Predicted

Affinity Capture-MS

FSW = 0.0405

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G53480

Predicted

in vitro

FSW = 0.0232

Unknown

IMPORTIN BETA-2 PUTATIVE
AT3G54670

Predicted

Phenotypic Enhancement

FSW = 0.0257

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT3G18790

Predicted

Affinity Capture-MS

FSW = 0.0682

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
ATCG00160Predicted

Phenotypic Enhancement

FSW = 0.0095

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
AT1G45145

Predicted

Phenotypic Enhancement

FSW = 0.0142

Unknown

ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT5G60540

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1206

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT2G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0448

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT5G47700

Predicted

two hybrid

FSW = 0.0256

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C)
AT1G04750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0956

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G02450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1016

Unknown

GLYCINE-RICH PROTEIN
AT4G14350

Predicted

Phenotypic Enhancement

FSW = 0.0102

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G33090

Predicted

Phenotypic Enhancement

FSW = 0.0466

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0370

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0196

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT1G79020

Predicted

Affinity Capture-MS

FSW = 0.0548

Unknown

TRANSCRIPTION FACTOR-RELATED
AT3G13445

Predicted

Phenotypic Enhancement

FSW = 0.0383

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT4G31720

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT3G06720

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0251

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT4G16143

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1513

Unknown

IMPA-2 (IMPORTIN ALPHA ISOFORM 2) BINDING / PROTEIN TRANSPORTER
AT1G72560

Predicted

Affinity Capture-MS

FSW = 0.0521

Unknown

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G38880

Predicted

Affinity Capture-MS

FSW = 0.0096

Unknown

NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR
AT3G20970

Predicted

Affinity Capture-MS

FSW = 0.0541

Unknown

NFU4 STRUCTURAL MOLECULE
AT2G14170

Predicted

two hybrid

FSW = 0.0419

Unknown

ALDH6B2 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE (ACYLATING)/ OXIDOREDUCTASE
AT2G30160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0981

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT1G64880

Predicted

Phenotypic Suppression

FSW = 0.0215

Unknown

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT5G02730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1297

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G54840

Predicted

Phenotypic Enhancement

FSW = 0.0735

Unknown

ARA6 GTP BINDING / GTPASE
AT2G03120

Predicted

Affinity Capture-MS

FSW = 0.0319

Unknown

ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT1G15960

Predicted

Affinity Capture-MS

FSW = 0.0757

Unknown

NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT4G39200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0949

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G48160

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0237

Unknown

SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE
AT2G46520

Predicted

two hybrid

in vitro

FSW = 0.0602

Unknown

CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE
AT4G02150

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2439

Unknown

MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER
AT2G38280

Predicted

two hybrid

FSW = 0.0323

Unknown

FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE
AT5G41770

Predicted

two hybrid

FSW = 0.0131

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G03740

Predicted

Affinity Capture-MS

FSW = 0.0115

Unknown

ATBPM4 (BTB-POZ AND MATH DOMAIN 4) PROTEIN BINDING
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.0154

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G26140

Predicted

Affinity Capture-MS

FSW = 0.0980

Unknown

UNKNOWN PROTEIN
AT1G80500

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G13620

Predicted

Affinity Capture-MS

FSW = 0.0246

Unknown

ATCHX15 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT2G23070

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G37420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0891

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.0293

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G44590

Predicted

Affinity Capture-MS

FSW = 0.0602

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D)
AT3G59020

Predicted

Affinity Capture-MS

FSW = 0.0736

Unknown

BINDING / PROTEIN TRANSPORTER
AT4G04700

Predicted

Affinity Capture-Western

Reconstituted Complex

Synthetic Lethality

FSW = 0.0339

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G21800

Predicted

Affinity Capture-MS

FSW = 0.0449

Unknown

QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING
AT5G01390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0706

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT5G01430

Predicted

Affinity Capture-MS

FSW = 0.0548

Unknown

GOT1-LIKE FAMILY PROTEIN
AT5G14060

Predicted

Affinity Capture-MS

FSW = 0.0920

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G14850

Predicted

Affinity Capture-MS

FSW = 0.0193

Unknown

MANNOSYLTRANSFERASE PUTATIVE
AT5G24840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1026

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G41700

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0339

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G60340Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT5G61010

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Co-purification

Affinity Capture-Western

Reconstituted Complex

Co-crystal Structure

biochemical

FSW = 0.2813

Unknown

ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING
AT1G20693

Predicted

Phenotypic Suppression

FSW = 0.0959

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25260

Predicted

Affinity Capture-MS

FSW = 0.0201

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G31170

Predicted

Affinity Capture-MS

FSW = 0.1301

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G79210

Predicted

Affinity Capture-MS

FSW = 0.0048

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT2G22040

Predicted

Affinity Capture-MS

FSW = 0.0345

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G44065

Predicted

Phenotypic Enhancement

FSW = 0.0340

Unknown

RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT2G47570

Predicted

Phenotypic Enhancement

FSW = 0.0624

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.1100

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G22790

Predicted

Affinity Capture-MS

FSW = 0.0618

Unknown

MATE EFFLUX FAMILY PROTEIN
AT4G31770

Predicted

two hybrid

FSW = 0.0211

Unknown

CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT5G16040

Predicted

Affinity Capture-MS

FSW = 0.0097

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G20560

Predicted

Affinity Capture-MS

FSW = 0.0643

Unknown

BETA-13-GLUCANASE PUTATIVE
AT5G49970

Predicted

Phenotypic Enhancement

FSW = 0.0891

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G49310

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1329

Unknown

IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER
AT5G52000

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1304

Unknown

IMPA-8 (IMPORTIN ALPHA ISOFORM 8) BINDING / PROTEIN TRANSPORTER
AT3G05720

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1505

Unknown

IMPA-7 (IMPORTIN ALPHA ISOFORM 7) BINDING / PROTEIN TRANSPORTER
AT1G02690

Predicted

Enriched domain pair

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0390

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT1G19880

Predicted

Gene fusion method

FSW = 0.0289

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT2G28840

Predicted

Gene fusion method

FSW = 0.0052

Unknown

ANKYRIN REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454