Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09530 - ( PIF3 (PHYTOCHROME INTERACTING FACTOR 3) DNA binding / protein binding / transcription factor/ transcription regulator )
21 Proteins interacs with AT1G09530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18790 | Experimentalin vitroin vitrotwo hybridtwo hybridin vitrotwo hybridin vitroin vitroin vitrotwo hybridin vitroReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted Complexpull downinteraction detection methodpull downpull downpull downpull downinteraction detection methodtwo hybridPhenotypic SuppressionAffinity Capture-Westerntwo hybrid | FSW = 0.3125
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT1G09570 | Experimentaltwo hybridtwo hybridin vitrotwo hybridin vitroin vitroReconstituted ComplexReconstituted ComplexReconstituted Complexinteraction detection methodpull downtwo hybridAffinity Capture-Western | FSW = 0.2844
| Class A:nucleusClass B:cytosol | PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT5G35840 | Experimental | FSW = 0.3077
| Class A:nucleusClass D:nucleus (p = 0.78) | PHYC (PHYTOCHROME DEFECTIVE C) PROTEIN HISTIDINE KINASE |
AT4G15090 | Experimental | FSW = 0.1111
| Class A:nucleusClass D:nucleus (p = 0.78) | FAR1 (FAR-RED IMPAIRED RESPONSE 1) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G01570 | ExperimentalReconstituted Complextwo hybridin vitro | FSW = 0.0863
| Class A:nucleusClass D:nucleus (p = 0.78) | RGA1 (REPRESSOR OF GA1-3 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G14920 | Experimentaltwo hybrid | FSW = 0.1440
| Class A:nucleusClass D:nucleus (p = 0.78) | GAI (GIBBERELLIC ACID INSENSITIVE) TRANSCRIPTION FACTOR |
AT5G17490 | Experimentaltwo hybrid | FSW = 0.1600
| Class A:nucleusClass D:nucleus (p = 0.78) | RGL3 (RGA-LIKE PROTEIN 3) TRANSCRIPTION FACTOR |
AT4G18960 | Experimental | FSW = 0.0202
| Class A:nucleusClass D:nucleus (p = 0.78) | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G02340 | Experimentalin vitroReconstituted Complextwo hybrid | FSW = 0.2449
| Class A:nucleusClass D:nucleus (p = 0.78) | HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G61380 | Experimentaltwo hybridtwo hybridtwo hybridtwo hybrid | FSW = 0.0821
| Class A:nucleusClass D:nucleus (p = 0.78) | TOC1 (TIMING OF CAB EXPRESSION 1) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G16250 | Experimental | FSW = 0.2735
| Class A:nucleus | PHYD (PHYTOCHROME DEFECTIVE D) G-PROTEIN COUPLED PHOTORECEPTOR/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT1G66350 | Experimentaltwo hybrid | FSW = 0.1600
| Class A:nucleus | RGL1 (RGA-LIKE 1) TRANSCRIPTION FACTOR |
AT2G26300 | Experimentalgtpase assay | FSW = 0.0440
| Class B:plasma membranenucleus | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT5G02810 | ExperimentalPhenotypic Suppression | FSW = 0.2051
| Class B:nucleusmitochondrionClass D:nucleus (p = 0.78) | PRR7 (PSEUDO-RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G03450 | Experimentaltwo hybrid | FSW = 0.1029
| Class D:nucleus (p = 0.78) | RGL2 (RGA-LIKE 2) TRANSCRIPTION FACTOR |
AT2G43010 | ExperimentalPhenotypic Enhancementtwo hybridReconstituted Complex | FSW = 0.5208
| Class D:nucleus (p = 0.78) | PIF4 (PHYTOCHROME INTERACTING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G20850 | Experimental | FSW = 0.0034
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G61270 | ExperimentalPhenotypic Enhancementinteraction detection method | FSW = 0.1142
| Unknown | PIF7 (PHYTOCHROME-INTERACTING FACTOR7) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR |
AT4G27630 | Experimentalgtpase assayfilter bindinggtpase assay | FSW = 0.2735
| Unknown | GTG2 (GPCR-TYPE G PROTEIN 2) |
AT1G64990 | Experimentalgtpase assay | FSW = 0.2238
| Unknown | GTG1 (GPCR-TYPE G PROTEIN 1) |
AT3G59060 | Experimentaltwo hybrid | FSW = 0.3054
| Unknown | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454